barSeed - Barley Seed Development Database

Probe CUST_17378_PI390587928

Source Contig U35_32570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17378_PI390587928	Hv_44K_v2	AGGAGGTCTACGGCCCGGGCGTCGAGGCGCTCGTCATGGACGAGGACGAGCAGGCGCTCG	370	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49701.1	2625	2e-24	2161 - 2220	100	60 / 60	minus	ABC10099
JLOC1	JLOC1_31793.1	2619	8e-25	384 - 443	100	60 / 60	plus
Harvest35	U35_32570	430	3e-25	371 - 430	100	60 / 60	plus

Contig Sequence (430 bp)

>U35_32570 430 Hv_44K_v2
CGTTGTGCTGTACCGCCTCCCTCCTCTTCCCTCTCACCCCAAATCCCAAACCTCCCCCGC
CTCCTTCCGGCGGCCCCAAAACCCTAGCCCGCCCCCGCCCCCGATCCCGCCGCCATGGAC
GACAGCCTCTACGACGAGTTCGGCAACTACATCGGCCCGGCGCTCGCCGACTCCGACGCC
GATGACTCGGACGCCGACGCCTCCCCGTCCCCCTCGCAGTCCCGCTCCCCCTCCCCGGCG
CGCTCCCCGTCCGGCTCCCCCGGCTCCCGCCGCCCCGCCGCCCTCATGGACGTCGACGAC
GACGACTACGCCGACGCCGCCCAGAACGCCGTCGTCCTCGCCGAGGACAAGAAGTACTAC
CCCACCGCCGAGGAGGTCTACGGCCCGGGCGTCGAGGCGCTCGTCATGGACGAGGACGAG
CAGGCGCTCG

Homology of Contig U35_32570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None