barSeed - Barley Seed Development Database

Probe CUST_17376_PI390587928

Source Contig U35_32574

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17376_PI390587928	Hv_44K_v2	ACCTAGCTAGGTCCAGGTGCAAGAAGAAGCTCAGCTTCAGCAATGGCGTCCAGAGCAGCA	36	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.885	2.827	2.580	4.049	3.028	3.004

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65477.1	1546	2e-24	1214 - 1273	100	60 / 60	minus	ABC01852 ABC01859 ABC01873
MLOC	MLOC_65477.2	1003	2e-24	920 - 979	100	60 / 60	minus	ABC01852 ABC01859 ABC01873
JLOC1	JLOC1_43092.2	1212	8e-25	979 - 1038	100	60 / 60	minus
JLOC1	JLOC1_43092.1	1553	8e-25	1272 - 1331	100	60 / 60	minus
Harvest21	ABC01855	666	3e-25	22 - 81	100	60 / 60	plus
Harvest21	ABC01852	1354	3e-25	51 - 110	100	60 / 60	plus	ABC01852
Harvest35	U35_32574	426	3e-25	37 - 96	100	60 / 60	plus
Harvest35	U35_13827	701	3e-25	57 - 116	100	60 / 60	plus
Harvest35	U35_13826	1378	3e-25	59 - 118	100	60 / 60	plus

Contig Sequence (426 bp)

>U35_32574 426 Hv_44K_v2
GCAAGCCACACGACCCTCCCTCAGTCCTAAGTAGCTACCTAGCTAGGTCCAGGTGCAAGA
AGAAGCTCAGCTTCAGCAATGGCGTCCAGAGCAGCAGCGGCCATCGCCGTCCTGGCCTTG
GTCTGCGCCGCCGTCCACTCGTCGGAGGGCCAGCTGTCACCAAACTTCCACGCCGCCACG
TGCCCGGACCTGGAGCGCATCGTGGAGTTCCACGTCGCCGAGACGTTCCGGCGCGACGTG
GGCGTGGCGCCGGCGCTCATCCGCATCCTCTTCCACGACTGCTTCCCGCAGGGCTGCGAC
GCCTCCGTGCCGGCGCCCTTCTTCGACGTGCCCACCCTCATCTCCTCCTTCGCCAACCGG
AGCCTCGACGTCGCCGACCTCGTGTCCCTCTCCGGCGCCCACACCTTCGGCGTCGCCCAC
TGCCCG

Homology of Contig U35_32574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None