barSeed - Barley Seed Development Database

Probe CUST_17367_PI390587928

Source Contig U35_18288

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17367_PI390587928	Hv_44K_v2	ACTATCGATTGCAGTGCCATGCACACCAGAGGAGGAAGAAATAAAAGTCGGGAGAAAACT	1476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363226	1951	2e-24	1639 - 1698	100	60 / 60	plus	ABC09219 ABC23161 ABC39645
MLOC	MLOC_7629.1	2237	2e-24	405 - 464	100	60 / 60	minus	ABC09219 ABC23161 ABC39645
MLOC	AK362092	1798	3e-21	1745 - 1798	100	54 / 54	plus	ABC09219 ABC23161 ABC39645
JLOC1	JLOC1_5044.1	2210	8e-25	388 - 447	100	60 / 60	minus
Harvest21	ABC39645	533	3e-25	288 - 347	100	60 / 60	minus	ABC39645
Harvest21	ABC09219	1289	1e-23	873 - 932	98	59 / 60	plus	ABC09219
Harvest35	U35_18288	1550	3e-25	1477 - 1536	100	60 / 60	plus
Harvest35	U35_18289	603	1e-23	187 - 246	98	59 / 60	plus

Contig Sequence (1550 bp)

>U35_18288 1550 Hv_44K_v2
GGAACACGATCACGCACGTCAAGGGGTTCGACGGGCCGCTGCCCTTCGCCCTGGAGACCG
GGTACGTCGAGGTGGACGAGGCGCACGGCGCCGAGCTCTTCTACTACTTCATCCAGTCGG
AGCGCAGCCCGCGGGACGACCCGCTCATCCTGTGGATCACCGGCGGCCCCGGCTGCTCCG
CGCTCTCGGGCCTCCTCTTCGAGATCGGGCCGCTCAAGTTCGACGTCGCCGGCTACACCG
AGGGCTTCCCGCGCCTCGTCTACTTCGAGGACTCGTGGACCCGGGTGAGCAACGTCATCT
TCCTGGACGCGCCCGTCGGCACCGGCTTCTCCTACGCGCGCGACGAGCAGGGCCTCGACG
TCAGCCTCACCGGCACCGGCACGCACCTCCGGGTGTTCTTGCAGCGGTGGATCGCCGACC
ACCCCGAGTTCGCCTCCAACCCGCTCTACATCGGCGGCGACTCCTACTCCGGGTACACCG
TCCCCGTCGCCGCGCTCGAGATCGCCGACCAGCCGGATAACGGGGGGCTCAACCTCAAGG
GGTACCTGGTGGGCAACGCCGCCACCGACGACAAGCACGACTCCGGCGGCAAGGTGCCGT
TCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGCAGGGCAGCTGCG
GCGGGGACTTCGTGACGACCCCCCGGAACGTGCAGTGCGCCAACGCGCTCATGGCGATCA
CCATCGCCACCTTCGCCGTGAACCCGGTGCACATCCTCGAGCCCATGTGCGGGCTGGCGC
TGGCGCCGCGCGCTCTACGTCCGACAACCCCGATCAGCAGCATCCTCTCCTCCGCGGGCG
CGGGGAGGAGGAGGTCGGCGAGGCTGCTGGTGCAGGAGGCGGACCGGCTGGCGCTCCCGG
TGGAGTGCCGGGACAACGGGTACCGGCTGTCCTACACCTGGGCGGACGACCCGGAGGTGA
GGGCGACGCTGGGCATCCGGGAGGGGACCGTCGGCGCGTGGAGCCGGTGCGTGCAGCTGA
CGCACTTCCGGCACGACGTGTACAGCACCGTGCCCTACCACGCCAACCTGACGCGGCGAG
GCTACCGCGCGCTGGTGTACAACGGCGACCACGACATGGACATGACCTTCGTGGGCACGC
AGGCCTGGATCCGGACGCTGGGTTACCCGGCGGTGGCGCCGTGGAGGCCGTGGTACGCCA
ACCGGCAGGTCGCCGGGTTCACGACGGAGTACGCCCACAACCTCACCTTCGCCACCGTCA
AGGGCGGCGGCCACACCGCGCCCGAGTACCGCCCCAAGGAGTGCCTCGCCATGCTCGACA
GGTGGACCTCGGCCGACGGCAGGCTCTGATCTGATGAGCCTCCGACTCATCGCTCCTACG
TACGGTTATGCGGTGCCTACGAGTACAAATTAGTGTACCGTATAATTCGATGTGGACCAC
GGCTAGCTGGTCAGGTCATTTCATGTACGGTGTAGTACTATCGATTGCAGTGCCATGCAC
ACCAGAGGAGGAAGAAATAAAAGTCGGGAGAAAACTGGAGAGTTCCATGG

Homology of Contig U35_18288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g01134.1	473	0.0	protein\|OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g21550.1	462	0.0
Arabidopsis v10	AT1G73300.1	441	2e-128	\| Symbols: scpl2 \| serine carboxypeptidase-like 2 \| chr1:27559673-27562048 REVERSE LENGTH=441