barSeed - Barley Seed Development Database

Probe CUST_17298_PI390587928

Source Contig U35_2496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17298_PI390587928	Hv_44K_v2	GGACTATTTCCTTCTTGACGTTGTTTTACCTTATGCATAAGTGCGCTTAACTATTAACAT	818	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76233.3	948	2e-24	16 - 75	100	60 / 60	minus	ABC05727
Harvest21	ABC05725	973	3e-25	460 - 519	100	60 / 60	plus
Harvest35	U35_2496	1332	3e-25	819 - 878	100	60 / 60	plus

Contig Sequence (1332 bp)

>U35_2496 1332 Hv_44K_v2
CTGCCTCCAAAGGCTCTGCGCCAGCTGCTGCTCCTGCATACTCCCGTAGCCGTCCTCACC
GCGGGCCCCTAGCCAAGAGATGGCCTCCGACGGCGTCATCACTCACCGCAACGTCGACGT
CAACGGGGTGCGCCTGCACGTCGCGGAGGCCGGCCCGGCGGGGGCGCCCGTGGTGCTGCT
GCTGCACGGCTTCCCGGAGCTGTGGTACACCTGGCGGCACCAGATGCCCGCGCTGGCCGC
GGCTGGCTACCGCGCCGTCGCGCCCGACATGCGCGGCTACGGCGACTCCGATGCGCCCTC
CGGCGGCCCGGACCAGTACACCGCGCTGCATGTCGTCGGCGACCTTGTCGCGCTCATCGA
CTCCCTCGGCCAGAAGCAGGTCTTCGTGGTGGCGCACGACTGGGGCGCCATAATAGCCTG
GAGCTTGTGCCAGTTCCGGCCTGACAGGGTGAAGGCGCTGGTCGCCTTGAGCGTCCCCTT
CACCCCTCGGAGCCCGGCCGTGAAGCCCGTCGACGGCGTCAGGGCTCTCTACGGCGACGA
CTTCTACATCGTCAGCTTCCAGGAGCCTGGGGCAATTGAAGCAGAATTCAAACGCCTTGG
TACGGAGTTGGTGCTAAGAAAGTTTTTCGCTGATCGAACTGCTAGCCCACTGTTCATCCC
GAAGAGCGGATGGGGCTCACCAGATGATGAGGTGCCCTTGCCGAGCTGGATCACAAAGCA
GGACATCAAGTACTACACGACCAAGTTTGACAAGTCTGGTTTCACCGGGGGAATGAACTA
CTACCGTGCTTTGAATAAGTAATTGAGTTGCTTACTTTGGACTATTTCCTTCTTGACGTT
GTTTTACCTTATGCATAAGTGCGCTTAACTATTAACATAACATAAATATGAAGACCTAAA
CTTAAAATTTGATTCAAAGATTAATGTATAATGTTTTCTATCGTGATTTTTTGTACAGTT
ACAGGAATTTTCAAGAGAAAAAAAACAAGCTTTGGATTCAAAACAACTAGATGTACAATT
TTTAGATTAGTACACTATATATGTGTAAGTGCAAATTCCAAACTGTATTTCGGATATGAA
AATATTATGATAAAATATGTAATATTCTCCCTCCATTCTATAACGTACTGCATGTAGATT
TTTTGAAAATTCAAACCTCACAAAATTTGATCAGCTTTGTGGAGAAAAATATTCACATCT
AGAATTCCAAACTTATATCATTAGATTCCCATAAGATGTAATTTCATATTTTATATTTAT
GGTATTTTACATATGAATAGTTTTATTTATAAATTTGCTTAAAGTTTGCAAAGTTTGAGT
TCTCAAAAATCT

Homology of Contig U35_2496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g19150.1	332	2e-120	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi1g42880.1	331	1e-129
Arabidopsis v10	AT2G26740.1	321	3e-89	\| Symbols: ATSEH, SEH \| soluble epoxide hydrolase \| chr2:11393148-11394257 REVERSE LENGTH=321