barSeed - Barley Seed Development Database

Probe CUST_17295_PI390587928

Source Contig U35_2499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17295_PI390587928	Hv_44K_v2	ATATCCTTCCTTGTACGCCAAAACCGCGAATTTGTCCGCTCTCTTTTGTTGTTGGTTGGT	943	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368728	1134	2e-24	967 - 1026	100	60 / 60	plus	ABC09250 ABC09252 ABC14337 ABC53019
MLOC	MLOC_71041.1	1597	2e-24	1197 - 1256	100	60 / 60	plus	ABC09250 ABC09252 ABC14337 ABC53019
JLOC1	JLOC1_47181.1	1446	8e-25	1063 - 1122	100	60 / 60	plus
Harvest21	ABC53019	1102	3e-25	942 - 1001	100	60 / 60	plus	ABC53019
Harvest35	U35_2499	1115	3e-25	944 - 1003	100	60 / 60	plus

Contig Sequence (1115 bp)

>U35_2499 1115 Hv_44K_v2
AAGCTAGCTGGTAGGAGGAGCTAGGATCGAATCGGATCGACCGGCATGGGGAGGTCGCCG
TGCTGCGAGAAGGAGCACACCAACAAGGGGGCGTGGACCAAGGAGGAGGACCAGCGGCTG
ATCGCCTACATCAGGGCCAACGGCGAGGGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGC
CTGCTGCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTC
AAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTC
GGCAACAAGTGGTCTCTCATCGCCGGCCAGCTGCCGGGCAGGACGGACAACGAGATCAAG
AACTACTGGAACACGCACATCAAGCGCAAGCTCCTCTCCCGCGGCATGGACCCGCACACG
CACCGCCCGCTCACGGCCGTCATCGACGCCGCCGCGCCGACCCGCCCGGCACAGATAGCC
GTGCCGGCGAGAGCGGCGCCCACCACGATGTTCGCCCTGCCAACCAAGCAGCAGCAGCCG
CCGGTGCCGGTCGAGTCGTCGGACGACGACGGCAGCAGCGGCGCGACGAGCACCGGGGAG
CCACGGTGCCCCGACCTCAACCTCGACCTGTCCGTGGGCCCGCCGGCGGCCGACACGCCG
ACGTCGCACCCGGTCTGCCTCTGCCGCCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGC
TGCCGGCAGGCCGACAGCGCGGGCTCCCAGGGCGGCGGCTTTAGATATTTCAGCCCGTTG
GAGGAGGGCCAGTACATATGAGAGACGACGGGACGGTTAGGCCCTAGAACTCCACAGCAA
TTTGTAAGCCAGGGAAATTTTTCTACTTACTCCTCCTCCAGTCCACAGCACCTAGCGTTG
CTGGCTGGCTCACAAAACGGTGAAAACAAAATCTAATCTGTTCATATCCTTCCTTGTACG
CCAAAACCGCGAATTTGTCCGCTCTCTTTTGTTGTTGGTTGGTGCTGTTGCGTTGGGTGG
GAAAAACCAGGGGATAATGTGACAAAGGTTGGTGTGTATTTTGTGGAAAAAGGGAGGGCC
TGATGTGAGGCAGCGCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35500.1	261	5e-130	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g24400.1	234	4e-124
Arabidopsis v10	AT4G38620.1	282	1e-85	\| Symbols: ATMYB4, MYB4 \| myb domain protein 4 \| chr4:18053866-18054876 FORWARD LENGTH=282