barSeed - Barley Seed Development Database

Probe CUST_17289_PI390587928

Source Contig U35_17205

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17289_PI390587928	Hv_44K_v2	TCGTTCCTTTCTACACTACTCCACTACTGATCGATTAATTAACTGCATCGCCTCAAAAAA	1005	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.660	8.071	1.014	0.487	0.942	0.839
Raw	77.040	98.633	10.224	5.721	3.259	3.758

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34348.1	617	9e-22	335 - 389	100	55 / 55	plus	ABC06632 ABC06633
JLOC1	JLOC1_22136.1	607	5e-22	325 - 379	100	55 / 55	plus
Harvest21	ABC06633	584	3e-25	514 - 573	100	60 / 60	plus	ABC06633
Harvest35	U35_17205	1076	3e-25	1006 - 1065	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_17205 1076 Hv_44K_v2
GCAGATTCCCACCCTCTTCTTCCTCTCGTCTCCTCCTCTCCACACGCGCACGGACGCACT
TCCATGGCCGCCGCCTCCTCCTCGTCCCCTCCTCTCAGCCCCGCTTCCTCGCGCTTTTTA
CGGACTATGCGAGCGTGCGTGTGCTAGGGTGGATCGTGCACACGGAGGCGTTTTGTTGGT
GAAGGGAGGAGCTAGCTAGGCTGTGGTGTGGGGTGGAGCTTGCTGGGGTATGGCCTGCAA
GAACGCGATGAGGAGAACGACGAGCTTGACGGAGGTCGCGCCGCCGTCCGTGCTGGCGGT
GGTGTTGGAGGACGAGGACGAGGACGAGCAGGCCAGGACTGTGGTGCAGGCCGAAGAAGG
TGGCGCCGACGGGGGGCAGGACTGGCTGGCGGCCCTAGGCGGCGGCAGCGGTGCCCCCGG
GACGGACTGGCTCGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTCCGGCG
GAACTCGGCCGACTACTCCAAGGTCGAGACCGCTGCGTTCCTCCGCCACTGCGGCCTCTG
CCGCCGCCTCCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGCGAGGCGGCCTTCTG
CAGCCTCGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGTC
AAGGTCGCCGGCGCCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACAGACACCGG
CGGCACGGTGGCGGCGGCCTGATCAGGGCGCACGAGAGGCAGGCAGGCAGGCTATCATCT
TCCGAAGCTACCAGCTCTAGAAGTTGTCGCTTCTCAGCGCTACGACGCATGTATTACTCG
TACGCACGTTCGTACGTACGAACGCCTCGAAAACGAATCGATCTCTGCAGGCCGTCAGCC
ACCAGTGGTCGATCGATCGACCATCGCCTCAGTACGACTGCATAGTTTTTTTTTTATTAA
TCTTATAAGTATGTACTTGGAGCTCGATCGAATCCGTTTCTGAGATCGTTCCTTTCTACA
CTACTCCACTACTGATCGATTAATTAACTGCATCGCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None