barSeed - Barley Seed Development Database

Probe CUST_17277_PI390587928

Source Contig U35_31506

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17277_PI390587928	Hv_44K_v2	AGCCGTGGCATTCCCGGCAAAGCTTGTTACTTCCATAGCTGGCTAGCGAGCTCACACGAA	38	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64948.1	2031	7e-23	42 - 101	98	59 / 60	plus	ABC06409 ABC15518 ABC18569
MLOC	MLOC_64949.1	869	7e-23	575 - 634	98	59 / 60	plus	None
JLOC1	JLOC1_42691.1	2609	4e-23	409 - 468	98	59 / 60	plus
Harvest21	ABC15927	539	1e-23	12 - 71	98	59 / 60	plus
Harvest35	U35_31506	438	3e-25	39 - 98	100	60 / 60	plus
Harvest35	U35_4105	617	1e-23	89 - 148	98	59 / 60	plus

Contig Sequence (438 bp)

>U35_31506 438 Hv_44K_v2
ACACCCAAGCTATACTAGCCAGCGCGACCACCTCGCAGAGCCGTGGCATTCCCGGCAAAG
CTTGTTACTTCCATAGCTGGCTAGCGAGCTCACACGAACCGGCGGTGTGGAGAACCGTGG
TAGCTAGGGGTACGGTTCCATTCACGAGGTACGTGCGAGCGAGCGAGCGTCCTTGTGGGC
GGCGCGGCGGTGCTGCTCTCGAACCGCCGCCGGGAGCGCCAACGCGGCCGTGCTGGTGGC
CGCGTGCGCGGGCTGCGTGGCCGCGGCGTACGCCTACGCCGTGTCGCGGCCGCGGCCCGT
GTACCTGGTGGACATGGCCGGGTACAAGCCCGGGCCGGCGCACGAGGCGACGCGCGCGCA
GGCCATCCGCCAGTTCGGGCTCGCCGGCGGGTTCGACGACGAGAGCATGTCGTTCCAGAA
GCGGATGATGGAGCGGTC

Homology of Contig U35_31506 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None