barSeed - Barley Seed Development Database

Probe CUST_17270_PI390587928

Source Contig U35_17218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17270_PI390587928	Hv_44K_v2	CCTGGACCTCTGTTTCCAAAACCAGCGGCTATCGAGAAATCAAAGTTATGCTCGAAGAAA	903	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251267.1	1189	3e-22	1093 - 1148	100	56 / 56	plus	ABC07265 ABC36833 ABC41033
MLOC	MLOC_13689.1	1333	9e-22	1017 - 1071	100	55 / 55	plus	ABC07265 ABC36833 ABC41033
MLOC	MLOC_13689.2	1336	9e-22	1020 - 1074	100	55 / 55	plus	ABC07265 ABC36833 ABC41033
JLOC1	JLOC1_9288.3	1251	5e-22	958 - 1012	100	55 / 55	plus
JLOC1	JLOC1_9288.2	1209	5e-22	916 - 970	100	55 / 55	plus
JLOC1	JLOC1_9288.1	1212	5e-22	919 - 973	100	55 / 55	plus
Harvest21	ABC07265	1230	1e-23	1160 - 1219	98	59 / 60	plus	ABC07265
Harvest21	ABC07264	995	5e-23	901 - 956	100	56 / 56	plus
Harvest35	U35_17218	978	3e-25	904 - 963	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_17218 978 Hv_44K_v2
GCCCATCCCTGCCCGAACCCTAACCTCAGATGTCGCTTCCTGCGTGAGAGGGCGCTGACG
CGGCAGCAGCATTGAAGGGGGTTTCGTCGTCGTCAGCGGCGACAGATGTATAAGCAGGGA
TCGGCCGGAGGGGCGGGGCTGGACCGGAAGCGCATCAGCGAAGCGCTCGATAAGCACCTG
GAGAAGGCGGCCGCGTCGCCCTCCACGTCGAGAGGCTCGGCGGGTGCCCGAGGTAACCGC
AACCGCGTCGTAGTGCCGTCCTCCATCCCCAAGGGCCGCTGCTCCGAAGGTGATATTTTC
ACAGAAGAACAAAATGAGCTAGTGGAATCAGCTGCTGAGATGTTGTATGGGCTGATTCAT
GCACGATACATTCTGACCAGTAAAGGGTTGGCTGCTATGCTGGAGAAATACAAGAACTAC
GACTTTGGACGATGTCCACGTGTTTATTGCTGTGGACAACCATGCCTACCAATTGGACAA
TCAGATATTCACCGATCTAGTACAGTGAAGATATACTGTCCTAAGTGCGAAGACATCTAC
TATCCACGTTCTAAATACCAAGGCAATATTGACGGAGCCTACTATGGGACAACATTTCCT
CACCTTTTTCTGATGACGTACGATCACCTCAAGCCCCAAAAGACCTCGCAGCGCTATGTT
CCTCGTGTATTTGGCTTCAAGCTCCACAAGCCATGACGTGGAGGTGAAGGAAAAGATAAG
AGGCCCCGGAAGACTACTGTAAGACTGCAATCGCCAGCTGGCAGCCCGATCATGCATGTT
GCGGTGATGCTGCCCACCCATATTGTGTGCCCTGCCAAGTCTACTCATCAACATTGAAAT
GTTGGTATAAAAGAAGACATGAGACGATGTTGTAACCTTATTCCAGCTCTACTGGCTATT
AAACCTGGACCTCTGTTTCCAAAACCAGCGGCTATCGAGAAATCAAAGTTATGCTCGAAG
AAAAAAAAAAAAAAAAAA

Homology of Contig U35_17218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31280.1	289	2e-94	protein\|casein kinase II subunit beta-4, putative, expressed
Brachypodium v1_2	Bradi1g27050.1	275	2e-95
Arabidopsis v10	AT5G47080.1	287	2e-88	\| Symbols: CKB1 \| casein kinase II beta chain 1 \| chr5:19124969-19126397 REVERSE LENGTH=287