barSeed - Barley Seed Development Database

Probe CUST_17269_PI390587928

Source Contig U35_17219

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17269_PI390587928	Hv_44K_v2	CAAGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAGTCTTCCCATGGT	490	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.318	0.570	1.138	1.966	1.095	1.339
Raw	47.158	140.530	231.796	656.138	124.701	166.764

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251267.1	1189	2e-24	421 - 480	100	60 / 60	plus	ABC07265 ABC36833 ABC41033
MLOC	MLOC_13689.1	1333	2e-24	347 - 406	100	60 / 60	plus	ABC07265 ABC36833 ABC41033
MLOC	MLOC_13689.2	1336	2e-24	347 - 406	100	60 / 60	plus	ABC07265 ABC36833 ABC41033
JLOC1	JLOC1_9288.3	1251	8e-25	247 - 306	100	60 / 60	plus
JLOC1	JLOC1_9288.2	1209	8e-25	246 - 305	100	60 / 60	plus
JLOC1	JLOC1_9288.1	1212	8e-25	246 - 305	100	60 / 60	plus
Harvest21	ABC07265	1230	3e-25	491 - 550	100	60 / 60	plus	ABC07265
Harvest35	U35_17219	841	3e-25	491 - 550	100	60 / 60	plus

Contig Sequence (841 bp)

>U35_17219 841 Hv_44K_v2
CCACTTCCCTCCCGTGCTCCTCCCCTCGCCTGGGCTCTCGTCCCATCCCTGCCCGAACCC
TAACCTCAGATGTCGCTTCCTGCGTGAGAGGGCGCTGACGCGGCAGCAGCATTGAAGGGG
GTTTCGTCGTCGTCAGCGGCGACAGATGTATAAGCAGGGATCGGCCGGAGGGGCGGGGCT
GGACCGGAAGCGCATCAGCGAAGCGCTCGATAAGCACCTGGAGAAGGCGGCCGCGTCGCC
CTCCACGTCGAGAGGCTCGGCGGGTGCCCGAGGTAACCGCAACCGCGTCGTAGTGCCGTC
CTCCATCCCCAAGGGCCGCTGCTCCGAAGGGGAGTCAGAGTCGGACAGTGAAGCATCAGA
TGTTGGTGGCTCTGATGGAGAAGATACCTCATGGATTTCATGGTATTGCAACCTAAGAGG
GAATGAGTTCTTCTGTGAAGTCGATGATGATTACATTCAAGATGACTTCAATCTTTGTGG
GCTTAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAGTC
TTCCCATGGTGATATTTTCACAGAAGAACAAAATGAGCTAGTGGAATCAGCTGCTGAGAT
GTTGTATGGGCTGATTCATGCACGATACATTCTGACCAGTAAAGGGTTGGCTGCTATGCT
GGAGAAATACAAGAACTACGACTTTGGACGATGTCCACGTGTTTATTGCTGTGGACAACC
ATGCCTACCAATTGGACAATCAGATATTCACCGATCTAGTACAGTGAAGATATACTGTCC
TAAGTGCGAAGACATCTACTATCCACGTTCTAAATACCAAGATATTGACGGAGCCTACTA
T

Homology of Contig U35_17219 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31280.2	288	1e-122	protein\|casein kinase II subunit beta-4, putative, expressed
Brachypodium v1_2	Bradi1g27050.2	274	5e-128
Arabidopsis v10	AT2G44680.1	283	1e-103	\| Symbols: CKB4 \| casein kinase II beta subunit 4 \| chr2:18426898-18428166 REVERSE LENGTH=283