barSeed - Barley Seed Development Database

Probe CUST_1724_PI390587928

Source Contig U35_14026

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1724_PI390587928	Hv_44K_v2	TGTACTGTTGATCGACCATTATCGATGTATGCAATTCTGACGGGACGTACCGTGAAAAAA	636	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249451.1	741	3e-22	646 - 701	100	56 / 56	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839
MLOC	MLOC_51663.1	515	3e-22	188 - 243	100	56 / 56	plus	ABC00041
JLOC1	JLOC1_33024.1	445	1e-22	188 - 243	100	56 / 56	plus
Harvest21	ABC00041	754	3e-25	637 - 696	100	60 / 60	plus	ABC00041
Harvest35	U35_14026	819	3e-25	637 - 696	100	60 / 60	plus
Harvest35	U35_41484	512	5e-23	332 - 387	100	56 / 56	plus

Contig Sequence (819 bp)

>U35_14026 819 Hv_44K_v2
CTTGGCCGCCGTCGAGTTCGAGTTCAGACCGAAGCCAAGTTTCCAGGTCGACCAGAGGAG
GCGAGCCATGGCCCGTACCAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCGCCCCG
CAAGCAGCTCGCCACCAAGGCCGCGAGGAAGTCCGCCCCGACCACCGGCGGCGTGAAGAA
GCCGCACAGGTACAGGCCCGGCACCGTGGCGCTCCGCGAGATCCGAAAGTACCAGAAGAG
CACGGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGCGAGATCGCGCAGGA
CTTCAAGACGGACCTCCGCTTCCAGTCCCACGCCGTGCTCGCCCTCCAGGAGGCCGCCGA
GGCGTACCTCGTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGT
CACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGAGCGCGCCTAGGC
GGGAGCCAGACCAGTCCGGCCCCAGTCCGCCGCATCCATCTGAGGGCGTGCCGCCGTTCG
TTCGCCGGCACCAGTTGATTCGCTTGCCGTTTTAGGTCTTGTTAGGTTTGGTTTGCGGTG
ATGCAAACAGATGCTTTCTGTGGAATTGTTGGTTAATGTACTGTTGATCGACCATTATCG
ATGTATGCAATTCTGACGGGACGTACCGTGAAAAAAAAAAAAAAAAAGTTGTCTGAATCC
GATTCTGTTTTCCTGCTAAAAAAAAAAAAAAAAATTCTGTTTTCCTGCTCTCTGAATCTC
TTGTTGTTTTCTCGGAGAGCCGGATAGAGGTCCTTCGGC

Homology of Contig U35_14026 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04030.1	137	9e-83	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi5g11920.3	137	4e-83
Arabidopsis v10	AT5G10980.1	136	3e-83	Histone superfamily protein \| chr5:3472591-3473349 REVERSE LENGTH=136