barSeed - Barley Seed Development Database

Probe CUST_17238_PI390587928

Source Contig U35_31523

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17238_PI390587928	Hv_44K_v2	GGCCAAGGACACGTTTAGGCTGAAGGTGAAGCCTGGTAAGACGTACATGCTCCGGCTCAT	225	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69899.3	1749	2e-24	779 - 838	100	60 / 60	plus	ABC18746 ABC47164
MLOC	MLOC_69899.4	1985	2e-24	537 - 596	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
MLOC	MLOC_69899.2	2132	2e-24	684 - 743	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
MLOC	MLOC_69899.1	2211	2e-24	838 - 897	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
JLOC1	JLOC1_46346.1	2166	8e-25	694 - 753	100	60 / 60	plus
Harvest35	U35_31523	379	3e-25	226 - 285	100	60 / 60	plus

Contig Sequence (379 bp)

>U35_31523 379 Hv_44K_v2
CTCCTGGCTCCGCGCCACCGTGCACGGCCCCATCGTCATCCTCCCGCCCGCCGGCGTGCC
CTACCCGTTCCCGGCGCCGGAGAGGGAGGTTCCCCTCATGTTCGGCGAGTGGTGGAGGAA
CGACACCGAGGCGGTCATCGCCCAGGCGCTGCAGACCGGCGGGGGCCCTAATGTGTCCGA
CGCTTATACGATGAACGGACTCCCTGGCCCGCTCTACGCATGCTCGGCCAAGGACACGTT
TAGGCTGAAGGTGAAGCCTGGTAAGACGTACATGCTCCGGCTCATCAACGCCGCGCTCAA
CGACGAGCTCTTCTCCGCCGTCGCCAACCACACACTCACCGTCGTCGACGTCGACGCGCT
CTACGTCAAGCCCTTCGCC

Homology of Contig U35_31523 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38410.1	550	7e-65	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g23350.1	578	1e-60
Arabidopsis v10	AT5G60020.1	577	5e-58	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577