barSeed - Barley Seed Development Database

Probe CUST_17206_PI390587928

Source Contig U35_17240

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17206_PI390587928	Hv_44K_v2	GCTTTGTATGGTTTTAAGCATATAGGAAAAAATATTAGCATATACTCCCTCCGTCCCAAA	2467	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.696	1.603	1.082	0.787	0.609	0.441
Raw	108.721	153.269	93.340	100.207	27.575	23.092

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_1950.2	2283	8e-25	2107 - 2166	100	60 / 60	plus
JLOC1	JLOC1_1950.1	2114	8e-25	1938 - 1997	100	60 / 60	plus
Harvest21	ABC05866	2342	3e-25	2139 - 2198	100	60 / 60	plus	ABC05866
Harvest35	U35_17240	2671	3e-25	2468 - 2527	100	60 / 60	plus

Contig Sequence (2671 bp)

>U35_17240 2671 Hv_44K_v2
GCGCCTCCATTGCCTCCCCTCGGCCCTTCCTCCTCCCCTCCCAAACGGCTGCGTGCTACC
CTAGTCACCTGCTAAAACCTTCTCCACTGTCCGCACGCGAGCGCTCATAAACACCAAACA
GGCCCAGCCCAAGAGCACGCGCGCCAGCCGGGCTTGGGGTGCAGAAGGATTCGGGAGGCG
GCGGCGGCGGCGGATTGACCCGAGATTCCCGGCGAGATGAAGTACGTGCTGGTCACTGGT
GGTGTTGTTAGCGGCCTCGGCAAGGGTGTCACGGCCAGCAGCATCGGCGTCGTCCTCAAG
GCGTGCGGTCTTCGCATTACGTCCATCAAGATCGATCCTTACCTCAACACTGATGCTGGG
ACTATGTCCCCGTTTGAACACGGTGAAGTGTTTGTGTTAGATGATGGTGGTGAGGTGGAC
TTGGATCTTGGGAATTATGAGAGGTTTCTTGATATTAAACTCACCCGGGACAATAATATA
ACTACTGGAAAGATCTACCAGTCTGTTATTGACAAGGAGAGGAAAGGGGAATACTTGGGA
AAGACTGTGCAGGTTGTGCCACACATTACAAATGCCATACAAGACTGGATCGAGCGTGTT
GCTATGATACCGGTGGACGGCATGGACGGACCAGCTGATGTCTGTGTGATCGAACTCGGC
GGAACAATTGGTGATATCGAATCTATGCCATTTATTGAAGCTTTGGGTCAATTCTCGTAT
CGTGTTGGACCTGGTAACTTCTGTCTGGTGCATGTCAGTCTTGTTCCAGTTCTGAATGTT
GTTGGTGAACAGAAAACCAAGCCGACTCAACACAGTGTGCGTGGTTTAAGGGGACTTGGC
CTCACCCCAAATATTTTAGCTTGTCGCAGTACAAAAGAACTGGAAGAAAATGTGAAAGAG
AAACTGTCTCAGTTTTGCCATGTGCCGGCAGCAAACATTCTCACTCTGTATGATGTTTCC
AATATTTGGCGTATTCCTTTGTTGCTACGGGACCAAAAGGCGCATGAAGCTATTCTTAAA
GTTCTGAACCTTGAAAGCTTTCCTCGTGAGCCAAAGTTGGACGAATGGGTTGCAAGAGCT
ACTATGTTTGACACCCTTCAGGATACTCTACACATTGCTATGGTTGGGAAGTACACTGGT
CTATCTGATTCCTACCTCTCCGTGTTGAAGGCCCTCTTGCATGCTTCGGTTTATTGCCAC
AGAAAGCTAGTTGTTGATTGGGTTGCTTCTACAGATCTTGAGGACTCTACCAGAATTGAG
GCACCTGATGCTTACAAAGCAGCTTGGAATTTACTGAAGAGTGCCGATGGCATTTTAGTA
CCTGGTGGCTTTGGAGACAGAGGTGTTCAAGGAAAAATTCTGGCTGCTAAGTATGCCCGT
GAAAACAATGTACCATATCTTGGTATATGTCTTGGAATGCAGATGGCTGTCGTAGAGTTT
GCTAGGCATGTCATGAATCTCCCTCATGCGAACAGTACTGAATTTGACCCCAATGCCAAG
ACCCCATGTGTTATTTTTATGCCTGAGGGTTCCAAAACACATATGGGTGGCACAATGCGC
CTAGGATCAAGGAGGACATTCTTCAAGGTTGCTGATTGCAAGTCAGCTAAATTGTATGGC
AACGTGGATTATGTCGATGAGAGGCACCGGCACAGATATGAGGTGAATCCTGATATGGTG
CCAGAGTTTGAAAACGCTGGACTCAAGTTTGTTGGCAAAGATGAGAGTGGCAGGAGAATG
GAGATAATCGAGATACCCAGTCACCAGTATTTCGTTGGAGCACAATTTCATCCTGAATTC
AAGTCAAGACCTGCGAAACCTTCTCCACTATTTGTTGGGCTAATTGCTGCCTCATCTGGG
CAATTGGACAAGGTGCTGCAGGGTTGCTCCAATGGCCATGTGGTTCCTGCCAAACATCAA
TTTAGCAATGGTCTATACACGCTGGCTGCACACCAAAATGCTGATGTACACTCAAATGGG
CATGCGAAGAAGCTTGCCAATGGTCTAGCGAATGGAAAATACTATCCGAATGGGAATGGT
GTCCATGCCTAGCTAGCTCAAGGATGCTCTCACCCTTTTACATTTTGCAGTTGTTGCATC
AGTTTTGTCGTGGCTGGCTAAGCTACCATGGTCGCTCGAGGAAGAAAAAGTTCTGTACTC
GATGCGATCTGTCTGCAGGGGATTGTGCTCGTTCCGTGTTTTTTAGTGAAAGACCGAGCT
GGATCTGCGTCAGTGGTTTGCTTGTTCTTCTCTACCAATTTCTGTAACAAGACAACAGAA
GTGGGTAAGAAGAGTCCGTGCTGTATATCTGAAAAAGGATAGGCTGAACGTTTTAATTGT
TTCGTGAGTTGGTGCTGAGATGTAAGCGAATTTGGGTGTTCCGCAGTTTGTATTTGGACG
CAGTTCTTGTGCTTTTGAACAAATAAGTTAATGCTTTGTATGATGTATCTGACTGCTTTG
TTATAGTGCTTTGTATGGTTTTAAGCATATAGGAAAAAATATTAGCATATACTCCCTCCG
TCCCAAAAATCTCTTTAGTATTTAGATACACTCATTTTTAGACAAAACTAAGACAAGAAT
TTTGGGATGGACGGAGTACAACAATAAATTAGGTTTATATTAAATTAATAATATAATATA
TTTTCTGTACCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g43020.1	606	protein\|CTP synthase, putative, expressed
Brachypodium v1_2	Bradi2g43640.1	607
Arabidopsis v10	AT3G12670.1	591	\| Symbols: emb2742 \| CTP synthase family protein \| chr3:4020351-4024086 REVERSE LENGTH=591