barSeed - Barley Seed Development Database

Probe CUST_17198_PI390587928

Source Contig U35_44842

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17198_PI390587928	Hv_44K_v2	ATATGATGCTCTGCTTACTTACTGTGGTGTTGTTGATGTGATGTGCATGCAGAGATGGGG	184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250623.1	752	2e-24	222 - 281	100	60 / 60	plus	ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
MLOC	MLOC_60968.1	1052	2e-24	511 - 570	100	60 / 60	minus	ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
Harvest21	ABC43038	488	3e-25	185 - 244	100	60 / 60	plus
Harvest35	U35_44842	488	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_44842 488 Hv_44K_v2
CTAGCACAGTCCCCTACCACCACCACCACCAGCCCACTCTATCAGCCTCGGGTGAAGCCG
AGCAGATCCATGGCGCAGTCTCGTCGCATGGCCGGGTCCGCCCTCCTGCTGCTGCTCCTC
CTCGTCGCCACAGGTACGTCCCGCACACTTCCCAGCGAGCTTACAGGGGTCCATTCCCTC
CATGATATGATGCTCTGCTTACTTACTGTGGTGTTGTTGATGTGATGTGCATGCAGAGAT
GGGGGCGACGACGGTGAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCACAAGTT
CAAGGGCACGTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCC
CGACGGCCAGTGCCACACCCAGAACCTCGCCCGCAAGTGCTTCTGCAAGAGGGTCTGCTA
GATCTGTTGCTGCTGTTGGTCAGTGCCGTTCGCTAGATCTGTTCGTCAGTAGCTGCCTGC
AGTTCGTG

Homology of Contig U35_44842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None