barSeed - Barley Seed Development Database

Probe CUST_17172_PI390587928

Source Contig U35_18586

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17172_PI390587928	Hv_44K_v2	CTGGCAGCGTTTAGATCACTAAAATAGTGATTTAAATGCTCTTATATTAGTTTGCAGAGG	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79575.1	1428	7e-23	1032 - 1091	98	59 / 60	plus	ABC22479
Harvest21	ABC31604	683	3e-25	617 - 676	100	60 / 60	plus
Harvest35	U35_18586	706	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_18586 706 Hv_44K_v2
AGACCAGCATCCTGAAGCGAGCCGTCGTCATCCAGCATAACCGGCTCAAGGACTACCAGA
ACATGGTGCAGGAGCGGTCCCAGTTCATGGAGATCACCGCCAAGTACCAGAAGCAGATCA
AGGAGCTACAGGAGACGAACTACGCGCTGTCTATCCATCTCAGGCAGTCGAGTCAACGGA
GTGGCATGTCCGGGCACCGCAACCCCGACATCTTCTAGGCGGCCACCGCATCTGCGCTGA
AGGTTATGTGCTGATTTGGACGCGAGATCCTGAGGCTGCGATTCTCGAAGGAATCATCTA
TAGTACAAGAAAACATCTTTGTGTAGTTTATGTTTGACACAATATGTATATACGTTTGGC
GGCGATCTTTTCGAATTCGCATCGGTAGCATGGAGGACCATGTGTGAATATGATAGCGAT
CACTGGGATCTCTTGCAACATCACTGGCTGACTTTTGATGAGGCCCAGATAAGCTATGCT
TACCGTCTACTCGTGGATTAGATTAATCGGAGAAGTCCTAATATTTCCAACATATAGCAC
ATTAATAGTATATTTTCAGGACGACGCTATTTGTATAGCGTTGCTATTTTTTCCTTGATA
TTATGTCTGGCAGCGTTTAGATCACTAAAATAGTGATTTAAATGCTCTTATATTAGTTTG
CAGAGGGAGTAACAAATAAGACACTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None