barSeed - Barley Seed Development Database

Probe CUST_17161_PI390587928

Source Contig U35_32882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17161_PI390587928	Hv_44K_v2	TGTTGTGAGTCTGAGATACATGATACTCCATTAGTAGATAGGCAGGCAGTCAGCCAGTCA	649	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366942	1617	2e-24	1331 - 1390	100	60 / 60	plus	ABC08343
MLOC	MLOC_66259.6	690	2e-24	533 - 592	100	60 / 60	plus	ABC08343
MLOC	MLOC_66259.1	1364	2e-24	1259 - 1318	100	60 / 60	plus	ABC08343
MLOC	MLOC_66259.4	1186	2e-24	746 - 805	100	60 / 60	plus	ABC08343
MLOC	MLOC_66259.3	1334	2e-24	894 - 953	100	60 / 60	plus	ABC08343
JLOC1	JLOC1_43644.3	1513	8e-25	611 - 670	100	60 / 60	plus
JLOC1	JLOC1_43644.2	1512	8e-25	610 - 669	100	60 / 60	plus
JLOC1	JLOC1_43644.1	2161	8e-25	1259 - 1318	100	60 / 60	plus
Harvest21	ABC08343	1625	3e-25	1317 - 1376	100	60 / 60	plus	ABC08343
Harvest35	U35_32882	718	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_14984	1625	3e-25	1317 - 1376	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_32882 718 Hv_44K_v2
TGAACAACAATGATTCATCTATTGCTTATACAGAAACGGATCAAATACTGTCCAAGTCTC
GCGCAGCCCGCAGCCGCACCTGCTGCATGATTCGATTCAGCGTGCAGCAACAAGTACGCA
GCAGGACCAAGTTGAACAGCAACGATCCATCTACTGCTTATACAGAAACGAATCAAATAC
TGTCCAAGTCTCGCGCAGCTCGTAGCCGCACCTGCTGCATGATTCGATTCAGCTCCGTCC
GTCCGGACAAGCGCACCTGCGCCCCATCCAACAGCTAGTGCGCCACGCCATGGAAAAAGT
GAGTACGTCAGGCGTGAGGAGAATGGGATCCAGGACAAGAAGGAAGCGCGAGCACATCTA
CCGCGATCGAGGATGGCGCCGCCGCTTACACATGAGTGGGGGAATTCTTCTATAGGGTTC
GTACCTCTGTTTTGGCCTAGCGGCCGCTGGGCTACGATGCATACATTGATACTGGGAAGG
ATGTTGTGTCATTTGAAGTAGTAGCCAGTCGCAAGCCCATCATGAGGAGACTATCATGCC
TCTTTGGATCGTTGAAAGTTACCAGCAACTGTGAACCAGCCCCAAGCAGGTTTACTGAGG
TTCGTGCCTGCTAGGTAGGCCTGATACTAGCTNTACCCAATTTTCTCCATGTTGTGAGTC
TGAGATACATGATACTCCATTAGTAGATAGGCAGGCAGTCAGCCAGTCAGGCATCGTG

Homology of Contig U35_32882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None