barSeed - Barley Seed Development Database

Probe CUST_17153_PI390587928

Source Contig U35_18596

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17153_PI390587928	Hv_44K_v2	TTAGTCGACTCAAGTCCATTGTTCTCGTCTAGGTCTAGTCTTGCTAAGGAGTAGCGTGTT	983	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251413.1	1109	2e-24	990 - 1049	100	60 / 60	plus	ABC09980
MLOC	MLOC_24267.1	193	2e-24	19 - 78	100	60 / 60	minus	ABC09980
JLOC1	JLOC1_16695.1	155	8e-25	16 - 75	100	60 / 60	minus
Harvest21	ABC09980	1241	3e-25	984 - 1043	100	60 / 60	plus	ABC09980
Harvest35	U35_18596	1241	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1241 bp)

>U35_18596 1241 Hv_44K_v2
GGCCGTTCTCGCGAAAGCAAACCCTAGCGCTCTCGCGAAAAGCTCCTCGATCCATCTCCA
TGGCGCCGTCGGCTTCCGACGTCCTGCGCCTCGACGGCAACGGGAACCCGAGGACGCTCC
GCCTCTTCGCGTCGCTCGTGGAAGCCGAGTCCCGCCGCTTCGCCTCCTCTGCCGCCTCCC
AACCCGCCGAGAACGACCTCGTCCGGGCGTTCCGCGGCGGCGCGACCCCGACCATCCCCA
TCGTCGAGTTCCTCGAGCGTCTCCAGCGCTGCAACTACTTGTTCGATAGCGCCGTCTACG
TCCTCGCGGCGGCGTACCTCGCGCTCTTCATGCGCAGCCCCGCCGCGCTCGAGGCGGGGA
TCGTCGTGGAGCCGGCCACGGCGCACCGTCTGGTTTCCGTGGCGGTCCTGATCGGCGCCA
AGTTCGTCAGCCCGAGGTACTTCGAGAGGCGGGTGGAATCGTTCCAGATCTGCTCGGGCC
AGTCCATCCGGTCCAGCGAGATGTGCCCGCTGGAGTTGCTGTTCCTACGCGCCCTCAACT
ACCGCCTCTTCATCGCCGACGAAGAATTCCAGCGCTTCTTCAGGATCCTGGAACGCCGTC
CAGCTCCAGCACGCAGCAGCCTGGCTTGCGGAGCGACGAAGAGGAAGGCCCAGGACGACG
AGGAACCACGCCGCGTGCGAGCATGCCAGCTCGCCGCCCGCTACGGCATCTCAGGATTCT
TCAACCGGAGCTAAGTTCTCAAACTCTTTCTCTCACCATTGCATCGCTCGCATTGGATTT
GAATAAGCATTGAATTGAATCATGTCAGGCAGGATCTCAGCATGCTTTCCTTCTGTCGCT
TACTTGATACTACTTACTGTCGTTTCTGTGTTCCCAATGTAGGTTCTTTTCATTGGAGAT
CCAGCAGAGGGAAGGAGTTTGAGGACGCCGGAGATCAAATGCTCGCCTAAATGTCGGGTC
TGTCAGATTGAGTACGACAAGTGTTAGTCGACTCAAGTCCATTGTTCTCGTCTAGGTCTA
GTCTTGCTAAGGAGTAGCGTGTTACAGTCAGTTAGTCCTTATGTAGGGTTTATCCCATAT
CAATAAAGAGTATTCGATGTTTTGCCCGACGGCTTTTAGTATCGTGCAATTCATGTGTCC
AAAAATTATTTAGCCCAAATCAGTCATTGTGTAAGTCTGTTCATCAAGGTTTCCAAGATC
AATAAAAAGGATACATTTTGCTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g46310.1	214	3e-74
Arabidopsis v10	None