barSeed - Barley Seed Development Database

Probe CUST_17085_PI390587928

Source Contig U35_13226

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17085_PI390587928	Hv_44K_v2	AGGATATTACCATCACAGTAAACTCGTCACCAAACAAGCTTGTTGGATCCCACATCAGCC	672	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58644.3	3085	7e-23	1367 - 1426	98	59 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_58644.2	3067	7e-23	1500 - 1559	98	59 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_58644.1	3175	7e-23	1417 - 1476	98	59 / 60	minus	ABC13590 ABC18488
JLOC1	JLOC1_38121.1	3313	4e-23	1574 - 1633	98	59 / 60	plus
Harvest21	ABC24715	809	3e-25	673 - 732	100	60 / 60	plus
Harvest35	U35_13226	809	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_13226 809 Hv_44K_v2
GCTGTTTCGACAATTGTATTGGCGTAGCAGCCCGAGCTTGCGGTCTTGTGAGCCTTGAGC
CCACAAAGGTTGCGGAGATCCTCAAGGATCGTCCATCTTGGTATCGCGACTGTCGTTGCG
TTGATATCCTCCATGTCTTCCCTACGGGTAATGGTGGAACTATCGAGTTAATCTACATGC
AGACTTATGCGCCGACGACTTTGGCGGCTCCACGCGATTTCTGGACGCTCCGCTACACCT
GCGGCCTTGAAGATGGCAGTCTTGTGATCTGTGAAAGGTCATTGACCCAGTCCACGGGTG
GTCCATCTGGGCCTAACACTCCTGGTTTTATTAGAGCCGAGGTGCTCCCTAGTGGTTATC
TGATTCGACCGTGCGAGGGAGGTGGCTCCATGATCCACATTGTGGATCATGTTGATTTGG
ATGCTTGGAGTGTGCCTGAAGTCCTTAGACCGCTCTATGAATCTCCAAAGATCGTTGCAC
AGAAGATGACTATTGCGGCACTGCGACACATCAGGCAAATCGCGCATGAATCAAGTGGTG
AAATCCCCTACGGTGCTGGACGCCAGCCTGCAGTTCTCAGAACCTTCAGCCAAAGGCTCA
GCAGAGGCTTCAACGATGCTGTGAGTGGATTTCCAGATGATGGTTGGTCTTTGTTGACGA
GTGATGGTGCTGAGGATATTACCATCACAGTAAACTCGTCACCAAACAAGCTTGTTGGAT
CCCACATCAGCCCTTCCCCGCTCTTTTCTGCTATCGGAGGTGGCATTTTGTGTGCANAGG
CATCAATGCTAGTGCAGGATGTCCCTCCT

Homology of Contig U35_13226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41860.1	856	2e-166	protein\|START domain containing protein, expressed
Brachypodium v1_2	Bradi4g01887.1	850	2e-168
Arabidopsis v10	AT2G34710.1	852	5e-129	\| Symbols: PHB, ATHB14, ATHB-14, PHB-1D \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr2:14639548-14643993 REVERSE LENGTH=852