barSeed - Barley Seed Development Database

Probe CUST_17062_PI390587928

Source Contig U35_25214

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17062_PI390587928	Hv_44K_v2	ATGAAGAGTCATATAGCATCTAGTGACTTTGATGGTCTCGTACAGGTTTGGGATGTTACT	979	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63920.4	1582	2e-24	189 - 248	100	60 / 60	minus	None
MLOC	MLOC_63920.1	3577	2e-24	1109 - 1168	100	60 / 60	minus	ABC07411 ABC07412
MLOC	MLOC_63920.2	3421	2e-24	972 - 1031	100	60 / 60	minus	ABC07411 ABC07412
MLOC	MLOC_63920.3	1274	2e-24	934 - 993	100	60 / 60	minus	ABC07411 ABC07412
JLOC1	JLOC1_41921.4	3261	8e-25	2071 - 2130	100	60 / 60	plus
JLOC1	JLOC1_41921.3	3192	8e-25	1979 - 2038	100	60 / 60	plus
JLOC1	JLOC1_41921.2	2272	8e-25	1059 - 1118	100	60 / 60	plus
JLOC1	JLOC1_41921.1	2456	8e-25	1216 - 1275	100	60 / 60	plus
Harvest35	U35_25214	1039	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1039 bp)

>U35_25214 1039 Hv_44K_v2
ATTCGGGCACGAGGGCCAGGAAGCATCCTTCTGCCAGTTGATGATGCACCCTGTACCGGA
CACCCGACCCAAGATGAGTGAGGTGCTGCAGAGTGAGTTCCTTAATCAATCAAGGAATAG
TTTGGAAGAGCACGATGCAGCTCTTCGGTTACGTGAAGACATAGAAGAACAAGAACTGCT
GCTGGATTTCCTTCTCCAGTTACAGAAAAGAAAGCAGGATGTAGCAGACAATTTGCAGGA
CACCGTCGCCTTTCTCTCTTCTGATATCAATGAGGTACTTCACCAGCAGTCAGCCCTCGG
TCAATGTGGAAATTTCTCAGTTGAGTTGGATAAAGAGGTCTCCTCTGGAACTGTTGAAGA
TCAGAGTGACTGTGGATCCAGAAAACGTTTCAGACCTGAACTGCACGCTGTTGATATGGA
GGAACACAGTCATAGTCTGGAAGAATGTTCCAGAACAGTGCCATCATCTGTGCTAATTCA
GGAAAGTGTGCTGTCAAAAAGCTCAAGGTTAATGAAAAACTTCAAAAAACTAGAAACAGC
ATATTTTCAAACAAGATCCAAGTTGGCAAGGCAAGTTGGCAATCCACTAAGTAGTCGCGA
TCAGGTCGTCAAGAGGACTACTGGGTCAGCTGTTGGAACTGAAGGGAGTTCAATAGATGA
TTTTGCTTTAGAAGGGCATTCTGGTAGAAGACATAGAGGTTGGATGAACTCTTTTCTTGA
AGGATTGTGCAGGTACTTGTCATTCAGCCAGTTGAAAGTTCGGGCGGAACTGAAGCAATG
TGATCTGCTGAACTCATCAAATTTAGTATGCTCTGTAGGCTTTGACCGGGATAAGGAGTT
TTTCGCAACTGCTGGTGTAAATAAGAAGATAAAAGTCTTTGAATATAATATGATCGTAAA
TGAACACCGTGATATTCACTATCCTGTGGTTGAGATGTCTAATAAATCGAAATTAAGTTG
TATTAGCTGGAACAGTTACATGAAGAGTCATATAGCATCTAGTGACTTTGATGGTCTCGT
ACAGGTTTGGGATGTTACT

Homology of Contig U35_25214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52640.3	629	0.0	protein\|suppressor of phythchrome A, putative, expressed
Brachypodium v1_2	Bradi2g48657.3	608	0.0
Arabidopsis v10	AT1G53090.1	794	4e-84	\| Symbols: SPA4 \| SPA1-related 4 \| chr1:19783748-19786690 FORWARD LENGTH=794