barSeed - Barley Seed Development Database

Probe CUST_17035_PI390587928

Source Contig U35_13250

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17035_PI390587928	Hv_44K_v2	GGAACCAAATAGTGTACTTCCAAAGTGGTGTATTGTAAGTACGTTATAGAAACGAATGTC	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73207.2	1980	3e-21	1839 - 1899	97	59 / 61	plus	ABC02996 ABC02999 ABC14547 ABC39745
MLOC	MLOC_73207.1	1941	3e-21	1800 - 1860	97	59 / 61	plus	ABC02996 ABC02999 ABC14547 ABC39745
JLOC1	JLOC1_48730.2	2190	2e-21	1985 - 2045	97	59 / 61	plus
JLOC1	JLOC1_48730.1	2085	2e-21	1880 - 1940	97	59 / 61	plus
Harvest21	ABC50405	569	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_13250	678	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_13250 678 Hv_44K_v2
TGTTCGCCTTCGTGGAGAAGTGGGCGCAGCAGAGGTGGCCCAAGTCCCGGTTCATCACCG
GAGAGATCCAGGTCCCGCTCATCTCCTCCGGCTTCAAGATCAACCTCTTCCGCCTGACGT
GGCGGTCCGCGTTCGTGGTGGCCACGACGGTGGTGTCGATGCTGCTGCCATTCTTCAACG
ACGTCGTGGGGTTCCTCGGCGCCATCGGGTTCTGGCCACTCACCGTCTACTTCCCCGTGG
AGATGTACATTGTGCAGAAGAAGATACCCAAGTGGAGCTCACAGTGGGTGTGCCTCCAGC
TGCTCAGCCTCGCCTGCCTAATCATCACCATTGCTGCCGCCGCCGGATCCATCGCCGGGA
TAATGTCCGATCTAAAGGTCTACAAGCCTTTCTCCACGACTGACTGATCGATGCCTGGCC
GTCGCATGAATGCACAGATCCTCGATGGACAGAATATGCCTAAAAGTTCTAATTAATTAA
TCAACCAATTATCACACGTTCGCTGAAAATTGCAAGTTCAAGTAATTGTTGCTTCCAAAC
AGCCGGTGTAACACCGGTGCTGATGATTTCATTTTCCTTTGTTTGCAATCCATTGTGTTA
ACTGAAAAATGGTAGAGAGGAACCAAATAGTGTACTTCCAAAGTGGTGTATTGTAAGTAC
GTTATAGAAACGAATGTC

Homology of Contig U35_13250 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34980.1	497	5e-58	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi2g24910.1	483	2e-62
Arabidopsis v10	None