barSeed - Barley Seed Development Database

Probe CUST_17027_PI390587928

Source Contig U35_13259

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17027_PI390587928	Hv_44K_v2	TCAAGTCCAACGACATGTACCTCTACGCCCGCATCGACATCGACATCAAGCTCGTCGAGG	336	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71749.1	3033	2e-24	536 - 595	100	60 / 60	plus	ABC02671 ABC12692
MLOC	MLOC_71748.1	4332	2e-24	536 - 595	100	60 / 60	plus	ABC12692
JLOC1	JLOC1_47701.1	1818	8e-25	452 - 511	100	60 / 60	plus
Harvest21	ABC30295	622	1e-23	293 - 353	98	60 / 61	plus
Harvest35	U35_13259	664	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_13259 664 Hv_44K_v2
TCGAGCACTGTTGGCCCACTGGCTCTCTCTCGGCGTTGAAAGCAGTACGACAGAGGCTAG
CTAGCTAGTGTACTGTCCCGGCACTGCACATAGCAGCAGCAGGGACAGGCGGAGAGCTAG
CTAGCCAGCCAGCCATGGCGCCGGCATTGCCTTGTAGCAGGCCAAAGCTGCTGCTCCTGT
GCGTGGCCCTGGCCTTCCTCCTGGCCGTGGACGTGGGCAGGGCGGACATCTACAAGGACA
TCCAGATCATATGGAGCGCGGACCACACCTACTACTTCATGGACGGCGACAGCGAGGCGC
TGGCGCTCTCGCTCGACTTCAACCGCGGCTCCGCCTTCAAGTCCAACGACATGTACCTCT
ACGCCCGCATCGACATCGACATCAAGCTCGTCGAGGGCAACTCCGCCGGCACCGTCTGCA
CCGTCTACACCATCTCGGAGGGGCCGTGGGACATCCACGACGAGATCGACCTGGAGTTCC
TGGGCAACTCCACCGGCGAGCCCTACACCCTCCACACCAACATATTCGCCTACGGCGTCG
GCGGCCGGGAGCAGCAGTTCAAGCTCTGGTTCGACCCAAGCGCCGAGTACCACACCTACT
CCATCGTCTGGAACCCCAGGCGCATCACGAATCGAGGTGGACGGCGTGACGATCCGTTCC
TACG

Homology of Contig U35_13259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51510.1	263	2e-75	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi5g20734.1	296	6e-80
Arabidopsis v10	None