barSeed - Barley Seed Development Database

Probe CUST_1699_PI390587928

Source Contig U35_14032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1699_PI390587928	Hv_44K_v2	TGTAGCGATGGTTCCCCTCTGGATTGTTCAATGGAATGTTGCTGCTGCTTCATTTCTTTG	559	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32599.1	1179	2e-24	427 - 486	100	60 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
JLOC1	JLOC1_21238.1	689	8e-25	425 - 484	100	60 / 60	plus
Harvest21	ABC00105	618	1e-24	560 - 618	100	59 / 59	plus	ABC00105
Harvest35	U35_14032	619	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_14032 619 Hv_44K_v2
CCCGCAGCGCCATTCTCCAACCTTCCAAGCTCCTCCCGTCCTCCCCTCGCTTCCTCCGAA
TCCGATGGCCCGCACCAAGCAGACGGCGCGCAAGTCCACGGGCGGGAAGGCGCCGCGGAA
GCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCC
GCACAGGTTCCGCCCCGGGACCGTGGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCAC
GGAGCTGCTGATCCGGAAGCTGCCGTTCCAGCGGCTGGTGAGGGAGATCGCGCAGGACTT
CAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTGTCCGCGCTGCAGGAGGCCGCGGAGGC
GTACCTGGTGGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGAGGGTCAC
CATCATGCCCAAGGACATCCAGCTCGCGCGCCGCATCAGGGGCGAGAGGGCCTGATGAAC
CACCTCTCTGTATTTCTCTTCTGCTGCTGTCCATGCTATCGGTCTCGTCGTGTGTTAGGA
TCTAGATGTTGGAGTATCTTGTAGCGATGGTTCCCCTCTGGATTGTTCAATGGAATGTTG
CTGCTGCTTCATTTCTTTG

Homology of Contig U35_14032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	4e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	7e-90
Arabidopsis v10	AT5G65360.1	136	2e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136