barSeed - Barley Seed Development Database

Probe CUST_16972_PI390587928

Source Contig U35_3658

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16972_PI390587928	Hv_44K_v2	ATCACATGTCAGTGTTTGAGCTTATGATGTCTTGATCAGGAAATGTTCTTTTTCTCTTCA	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353872	772	2e-24	671 - 730	100	60 / 60	plus	ABC10671 ABC14451
MLOC	MLOC_54115.2	1655	2e-24	1506 - 1565	100	60 / 60	plus	ABC10671
JLOC1	JLOC1_34823.1	869	8e-25	708 - 767	100	60 / 60	plus
Harvest21	ABC10671	736	3e-25	619 - 678	100	60 / 60	plus	ABC10671
Harvest35	U35_35266	432	3e-25	296 - 355	100	60 / 60	plus
Harvest35	U35_3658	678	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_3658 678 Hv_44K_v2
AGATCTCCGCTTTCCCTGCCTGCGCCGGACGGACGGAGCCACCCACCCAAGCGACCGGAG
CGGCGAGCGGCGGAGAGATGTCGTCGGCGGGGACGGCGGGGGAGGAGACGGTGCGCGCGT
CGCACATCCTGATCAAGCACGAGGGGTCCCGGCGCAAGGCGTCCTGGAAGGACCCGGAGG
GCCGGGTCATCTCCGCCACCACGCGCGCCGACGCCGCCGCGCGCCTCGGCGAGCTCCGCT
CCCAGATCCTCGCCGGCCGCGCCTCCTTCGCCGACCTCGCCGCGCAGCACTCGGACTGCT
CCTCCGCCCGCCGCGGCGGCGACCTAGGCACCTTTGGGAGGAGGCAGATGCAGAAGCCCT
TTGAGGACGCCACGTACGCTCTCAAGGTGGGGGAGATCAGCGACATCATCGACACCGAGA
GCGGGGTTCACATCATCCTGCGTACCGCATAGGGAGAAAGAAGCCCGCGCCGTGGCCGTC
ACAACACCCTCTGATATTATTTAGCACTTTTCCTTCTTCCAGGGCCTGCGGCTCTTCTCA
TTCTGGCAGCCCAAAACTTGAATGAATGAAGAAAAATGTCTTGTATCGTCTCGCCATTTT
GCTACGGTTGATACATATATCACATGTCAGTGTTTGAGCTTATGATGTCTTGATCAGGAA
ATGTTCTTTTTCTCTTCA

Homology of Contig U35_3658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g01720.1	129	8e-71
Arabidopsis v10	AT2G18040.1	119	6e-52	\| Symbols: PIN1AT \| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 \| chr2:7842346-7843537 FORWARD LENGTH=119