barSeed - Barley Seed Development Database

Probe CUST_16971_PI390587928

Source Contig U35_3659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16971_PI390587928	Hv_44K_v2	GTCTCGCCATTTTGCTACGGTTGATACATATATCACATGTCAGTGTTTGAGCTTAAAAAA	604	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353872	772	9e-22	640 - 694	100	55 / 55	plus	ABC10671 ABC14451
MLOC	MLOC_54115.2	1655	9e-22	1475 - 1529	100	55 / 55	plus	ABC10671
MLOC	MLOC_54115.1	806	9e-22	733 - 787	100	55 / 55	plus	ABC10671 ABC14451
JLOC1	JLOC1_34823.1	869	5e-22	677 - 731	100	55 / 55	plus
Harvest21	ABC10671	736	2e-22	588 - 642	100	55 / 55	plus	ABC10671
Harvest35	U35_3659	754	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_35266	432	2e-22	265 - 319	100	55 / 55	plus
Harvest35	U35_3658	678	2e-22	588 - 642	100	55 / 55	plus

Contig Sequence (754 bp)

>U35_3659 754 Hv_44K_v2
CACGCGTCCGGGATCTCGAAAAAAGATCTCCGCTTTGCCTGCCTGCGCCGGACGGACGGA
GCCACCCACCCAAGCGACCGGAGCGGCGAGCGGCGGAGAGATGGCGTCGGCGGCGGGGGA
GGAGACGGTGCGCGCGTCGCACATCCTGATCAAGCACGAGGGGTCCCGGCGCAAGGCGTC
CTGGAAGGACCCGGAGGGCCGGGTCATCTCCGCCACCACGCGCGCCGACGCCGCCGCGCG
CCTCGGCGAACTCCGCTCCCAGATCCTCGCCGGCCGCGCCTCCTTCGCCGACCTCGCCGC
GCAGCACTCGGACTGCTCCTCCGCCCGCCGCGGCGGCGACCTAGGCACCTTTGGGAGGAG
GCAGATGCAGAAGCCCTTCGAGGACGCCACGTACGCTCTCAAGGTGGGGGAGATCAGCGA
CATCATCGACACCGAGAGCGGGGTTCACATCATCCTGCGTACCGCATAGGGAGAAAGAAG
CCCGCGCCGTGGCCGTCACAACACCCTCTGATATTATTTAGCACTTTTCCTTCTTCCAGG
GCCTGCGGCTCTTCTCATTCTGGCAGCCCAAAACTTGAATGAATGAAGAAAAATGTCTTG
TATCGTCTCGCCATTTTGCTACGGTTGATACATATATCACATGTCAGTGTTTGAGCTTAA
AAAAAAAAAAAAAAGGAAATGTTCTTTTTCTCTTCATTTCATTTGTGATAAATCATTTCA
AATGAGTGTTGATGCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g01720.1	129	1e-69
Arabidopsis v10	AT2G18040.1	119	1e-51	\| Symbols: PIN1AT \| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 \| chr2:7842346-7843537 FORWARD LENGTH=119