barSeed - Barley Seed Development Database

Probe CUST_1694_PI390587928

Source Contig U35_14037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1694_PI390587928	Hv_44K_v2	AAAGTTGTTCCAGCCGAATAGTAAGTTGTGGGAGTACATCCTACAAATTAGCTATCGAAA	956	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77754.1	491	2e-24	182 - 241	100	60 / 60	minus	ABC00126 ABC00136
MLOC	MLOC_34920.1	383	2e-24	49 - 108	100	60 / 60	minus	ABC00126 ABC00136
JLOC1	JLOC1_51841.1	352	8e-25	43 - 102	100	60 / 60	minus
JLOC1	JLOC1_22561.1	350	8e-25	16 - 75	100	60 / 60	minus
Harvest35	U35_14037	1028	3e-25	957 - 1016	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_14037 1028 Hv_44K_v2
TTTGGGGTCGGCACGACTCAACAGCCGCTCTCCGAGTCTCCTGAAAGCTGCAACCTCCCC
CTCTCGGCGAATTTGGGGTTTCCGAAGCGCGCGAGGTGAACCAAAGTTTTGATCATGGCT
CGTACTAAGCAGACTGCTCGTAAGTCCACTGGAGGGAAGGCTCCAAGGAAGCAGCTAGCC
ACCAAGGCTGCCCGCAAGTCTGCTCCCACAACTGGAGGAGTGAAGAAGCCTCACCGTTAC
CGCCCTGGAACTGTTGCTCTTCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTC
ATAAGGAAGCTTCCATTCCAGAGGCTTGTCAGGGAGATTGCCCAGGACTTCAAGACTGAC
CTCCGCTTCCAGAGCCATGCGGTGCTTGCCCTTCAGGAGGCTGCAGAGGCCTACCTGGTG
GGTCTCTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCC
AAGGACATTCAGCTGGCTAGGAGGATCCGTGGCGAGAGGGCTTAAGCTGCTTTGCCTGTG
GGAATGGCTCTGGTGGGCATAGCTCCGTGTGTCTGCTTTTGCTGCTGAACACTTATCATG
TGTCGTGAACTACTAATATTAGTCGTCTGTAGTAATATGTCAGTACTATATTCTGTGTCG
TACTATGTTCTAGAGCTGGATCATTTGTTCGTTGGTCGTCCTGAAGCATCCACATGGCGG
GTTCTTATCTGAACCTTACATTTTATGTTCGAGGATTAGTGATTGTGTGAACTGTTATTA
TGTGCCTGTGTCTCGTTTTATTTGTATCTCTGTGATGCAAGTTTAAATAGGGGGGTCCTT
CTGTGCTAGTAGCACGAGGGCTAGTCAGGTTGCTGGCAAGTGAAATTTCTGATCAAAAAA
AAAAAAAGCAATTCCTGTTGTATACGCTTTCTGTAGTTTAGCCATGCCTAGACCCAAAAG
TTGTTCCAGCCGAATAGTAAGTTGTGGGAGTACATCCTACAAATTAGCTATCGAAAAAAA
AAAAAAAA

Homology of Contig U35_14037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04030.1	137	9e-82	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi5g11920.3	137	4e-82
Arabidopsis v10	AT5G10980.1	136	3e-82	Histone superfamily protein \| chr5:3472591-3473349 REVERSE LENGTH=136