barSeed - Barley Seed Development Database

Probe CUST_16944_PI390587928

Source Contig U35_3689

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16944_PI390587928	Hv_44K_v2	TCAGCGGCAACATCAGATATGGTTGTTATCTGCGAGGAGTCTCATACTGTACATGACATG	822	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4966.5	3763	2e-24	3308 - 3367	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.2	3829	2e-24	3325 - 3384	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.3	3750	2e-24	3246 - 3305	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.1	3397	2e-24	3247 - 3306	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.4	3806	2e-24	3240 - 3299	100	60 / 60	plus	ABC09189 ABC38397
MLOC	AK363613	5070	7e-23	4637 - 4696	98	59 / 60	plus	ABC09189 ABC13844 ABC17852 ABC41122 ABC44969
JLOC1	JLOC1_3163.1	3948	8e-25	3241 - 3300	100	60 / 60	plus
Harvest21	ABC09189	1505	3e-25	823 - 882	100	60 / 60	plus	ABC09189
Harvest35	U35_3689	1505	3e-25	823 - 882	100	60 / 60	plus

Contig Sequence (1505 bp)

>U35_3689 1505 Hv_44K_v2
CAGGTGGCGATGGCTCCATTTACGCCCTTCTTTACTGAAGTTCTTTACCAAAATCTACGG
AAAGCGTCAAGTAAATCAGAGCAGAGCATTCATTTTTGCAGTTTCCCTTCCACAACTGGG
GAGAGAGATGAGCGTGTTGAGCGAAGTGTGACTAGGATGATGACCATCATTGATCTTGCA
CGCAATATTCGGGAACGGCACAGCAAAGCTCTAAAAACACCACTGAAGGAGATGGTGGTT
GTTCACCCTGACAGTGAATTTCTTGAAGACATCACTGGAAAACTGAAAGAGTATGTCATG
GAGGAGATGAATGTTAAGACTGTGACTCCATGTAATGATCCCATGAAGTATGCTTCTCTG
CGCGCAGAACCCAATTTTAGTGTGCTAGGTAAAAGACTAGGAAAGGACATGGGCAAAGTA
TCAAATGAAGTGAAGAAAATGACCCAGGGGGAAATCTTAGCCTTTGAGCAAAGCGGAGAG
ATTTCGTTCCTTGGTCATTGCCTGACGCTAGACGATATTAAGGTGGTCCGACAGTTCAAG
CGTCCTGTGGATGTATCAGAGAAGGAAATTGATGCCGCGGGAGATGGTGATGTGTTGGTC
ATTTTGGACCTCAGAGCGGACCAATCATTGATTGAAGCTGGAGTGGCTCGAGAGGTTGTA
AACAGAATCCAGAAATTACGGAAGACTGCCCAGCTTGAGCCTACAGACTTAATTGATGTG
TACTACGAGTCTGTAGACAACAACAGCAAAACACTTGAAGAAATTTTGCAGTCACAGGAT
CAGTATATTAGGGACGTGCTTGGTAATTCACTAGTTCCAAAGTCAGCGGCAACATCAGAT
ATGGTTGTTATCTGCGAGGAGTCTCATACTGTACATGACATGTCATTTGTCATCTACATT
GCAAGATGCATGCCTGTGCTCGCAGCTGATCTCCTTTCCTATGCCTTAGGCAACAGTGAC
CATATTGAGGCGTTAAGAGTGTATTTGTTGTCAAGGTCCATTTCCAGATTGAAGAACGAA
TTCCAGACTGGAAATGGCAAGATTACGGTAAAGTGCATCGAAGGCTATCCCCCAATTGAT
CTGCAGCTAGGGAAGCATGTTTTTCTTAGCGCTGGCGATTTTTACCAGGCTAATCGCTCT
TGATTCTTGTCTCTGAGCACCCCAGTTTTGTCATTTTCAACCGCAATTCATTCTAATCAG
GCTGATTCTGTTTGTACCTCACAAAAGCAATGTATCATTTACTTAGATGTGCTGGCAAGG
ATGGAAGGGAGATGGAATTGTCAAGTGTGTATTCAGAGATATACAGTCTATTACAGTGTG
CTCCCGTTTCTACACACTGCAAAGCTTGCCACACAAGTTTTGCGCTTTGTGTACTTCGAT
TTAGTGGTCTTATGTTGAGTTTTCTCATATGGAAGTTTGACTACCCCCATTTGGTCCAAG
ATATTAGGACACCGAAAACGCCCACGCGTTTGTTATGGGCAGGTGCAGACTAAAGGTTCT
TCGGT

Homology of Contig U35_3689 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43760.1	1158	0.0	protein\|tRNA synthetase class I, putative, expressed
Brachypodium v1_2	Bradi1g30610.1	1173	0.0
Arabidopsis v10	AT4G10320.1	1190	3e-134	tRNA synthetase class I (I, L, M and V) family protein \| chr4:6397526-6404509 REVERSE LENGTH=1190