barSeed - Barley Seed Development Database

Probe CUST_16779_PI390587928

Source Contig U35_47381

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16779_PI390587928	Hv_44K_v2	GAACGAACGATGATATCTTGTGATGCACTAAAGCAATAAGAGTGACATTGTTACGAAAAA	12	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374889	2149	2e-23	1277 - 1334	100	58 / 58	plus	ABC48397
MLOC	MLOC_66660.3	5795	2e-23	895 - 952	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.4	5221	2e-23	895 - 952	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.1	4001	2e-23	925 - 982	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.6	5490	2e-23	890 - 947	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.7	5753	2e-23	890 - 947	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.8	6951	2e-23	890 - 947	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.5	4879	2e-23	895 - 952	100	58 / 58	plus	ABC12720 ABC48397
MLOC	MLOC_66660.2	4264	2e-23	925 - 982	100	58 / 58	plus	ABC12720 ABC48397
JLOC1	JLOC1_43956.1	2553	1e-23	855 - 912	100	58 / 58	plus
Harvest21	ABC48397	377	3e-25	13 - 72	100	60 / 60	minus	ABC48397
Harvest35	U35_47381	377	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (377 bp)

>U35_47381 377 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGTAACAATGTCACTCTTATTGCTTTAGTGCATCACAAGATAT
CATCGTTCGTTCAACAATTTGCTAAGAGGGGCATCAGGCTTACATACATCAATCACCGGT
TATCATCATCACCAAATAAAACCTTGTAAAACCTCCGTCTTTCCTCCCTCTTCTCCGCAC
TATCCAACAGTACCCCTGACTCATCTTCGAGCTCCTCTTCTTCCTTCTTCACATCAACCT
CACCTTGCCTCCTCTTCTTCTCCAAATTCGCAGCACGTCGCCGCTGATTAAATTCATGCA
GACCCTCCTGCATCAGTTCCCCAAGTCTATCCTTTGCCACCACCAGTGGATCCTTCACCC
TCAGCTCAGACCCCTCG

Homology of Contig U35_47381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None