barSeed - Barley Seed Development Database

Probe CUST_16770_PI390587928

Source Contig U35_11571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16770_PI390587928	Hv_44K_v2	ATAAAGAAATGATCAACCTGTTCGACTTGAGCGCTGGAGCCAGCGCCAGGGTCGCCACCA	203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364175	3392	2e-24	406 - 465	100	60 / 60	plus	ABC03031 ABC22235
MLOC	MLOC_64767.1	3610	7e-23	2989 - 3049	98	60 / 61	minus	ABC22235
MLOC	MLOC_64767.2	3163	7e-23	2989 - 3049	98	60 / 61	minus	ABC22235
MLOC	MLOC_64767.3	3120	7e-23	2944 - 3004	98	60 / 61	minus	ABC22235
MLOC	MLOC_64767.4	3731	7e-23	3101 - 3161	98	60 / 61	minus	ABC22235
MLOC	AK370334	2412	9e-22	1 - 55	100	55 / 55	plus	ABC22235
JLOC1	JLOC1_42558.4	3213	4e-23	134 - 194	98	60 / 61	plus
JLOC1	JLOC1_42558.2	3219	4e-23	130 - 190	98	60 / 61	plus
JLOC1	JLOC1_42558.1	3578	4e-23	499 - 559	98	60 / 61	plus
Harvest21	ABC25748	362	3e-25	204 - 263	100	60 / 60	plus
Harvest35	U35_11571	364	3e-25	204 - 263	100	60 / 60	plus

Contig Sequence (364 bp)

>U35_11571 364 Hv_44K_v2
CAGCTCGCTCGCTCGCTCGCTCTGCCCCCTCCCTCCCTCCCCACGCAGCGCCGGTGGGGC
ACGGCCTCCGGCGACCGGACGCCACCGCCGCACCGCTCCACACTGCCGAACCGGCGCTGG
CCGTAGTCTGTCCGGAGACGATTTTCGCTGCAGCTACCTGTTGCCGCCGCTGCTGCTGGT
GCTGGTGGCGGTGGGTTGGGGGAATAAAGAAATGATCAACCTGTTCGACTTGAGCGCTGG
AGCCAGCGCCAGGGTCGCCACCAGAGATGGTTCTCCGGTCAGAGGAACGCAGTCGGACCG
CAAGGAGTACGCTGATCTCAAGACGGTGACTGGCAGCATGGGGAGGAGCTCGTCCGACAG
ATCC

Homology of Contig U35_11571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None