barSeed - Barley Seed Development Database

Probe CUST_16743_PI390587928

Source Contig U35_35537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16743_PI390587928	Hv_44K_v2	AGTTTGTTGTGGTTAACAAGCATCTTCTCCATGACTTGACTGAGATGGGTATCTGGACAC	88	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248176.1	2795	2e-24	2044 - 2103	100	60 / 60	plus	ABC08195 ABC14526 ABC49974
MLOC	MLOC_47103.1	1527	2e-24	710 - 769	100	60 / 60	minus	ABC08195 ABC14526 ABC49974
MLOC	MLOC_47103.3	1307	2e-24	514 - 573	100	60 / 60	minus	ABC08195 ABC14526
MLOC	MLOC_47103.2	1524	2e-24	707 - 766	100	60 / 60	minus	ABC08195 ABC14526 ABC49974
JLOC1	JLOC1_30411.1	1653	8e-25	760 - 819	100	60 / 60	plus
Harvest21	ABC08195	2362	3e-25	1593 - 1652	100	60 / 60	plus	ABC08195
Harvest35	U35_35537	148	3e-25	89 - 148	100	60 / 60	plus
Harvest35	U35_2243	2676	3e-25	1843 - 1902	100	60 / 60	plus

Contig Sequence (148 bp)

>U35_35537 148 Hv_44K_v2
GCCATTACGGCCGGGCAGATTCTTGCCAACAAGGTATGTGTTAAACCCTACACATCTAAC
ATCTACATTCGGCGGGTTCTTAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCAT
GACTTGACTGAGATGGGTATCTGGACAC

Homology of Contig U35_35537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None