- Probe CUST_1672_PI390587928
- Source Contig U35_14043
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1672_PI390587928 | Hv_44K_v2 | GCACCTTCTTGTTGCCATCAGCAATGGAAATGAAAATGTTGCGTTCCTGTTCTCAAAAAA | 587 | GeneList: thistle2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.680 | 0.932 | 1.211 | 1.115 | 0.917 | 0.863 |
| Raw | 41533.733 | 90495.500 | 101345.966 | 136821.433 | 41735.467 | 43379.333 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15473.1 | 390 | 9e-22 | 197 - 251 | 100 | 55 / 55 | minus | ABC00405 ABC29964 ABC32138 |
| JLOC1 | JLOC1_10617.1 | 330 | 5e-22 | 137 - 191 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC00205 | 659 | 3e-25 | 588 - 647 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00719 | 635 | 1e-23 | 565 - 624 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00129 | 659 | 6e-22 | 589 - 648 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC29964 | 173 | 8e-21 | 81 - 135 | 98 | 54 / 55 | plus | ABC29964 |
| Harvest35 | U35_14043 | 659 | 3e-25 | 588 - 647 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14035 | 662 | 1e-23 | 589 - 648 | 98 | 59 / 60 | plus |
Contig Sequence (659 bp)
>U35_14043 659 Hv_44K_v2 GCAATCTTCCAATCCCACCTTCTTCTCCTCCTCCTCGACCTCTCTGCGCGCCGACGTTAT GGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCT GGCCACCAAGGCAGCCCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCG CTTCCGCCCCGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACCGAGCT GCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGAGGGAGATCGCCCAGGACTTCAAGAC CGATCTCCGCTTCCAGTCCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCGAGTCCTACCT CGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCAT GCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGAGAGAGGGCCTAGGCTGCCATGCG TCGTCTCTTAGATCCCTGTTAGGCATCGGTGGAAATGTGTGCGTTGCAAGTGTTTCAGAA TGTGCCTGTGTCGTTCTTGTCATGGTGGATGTGTGCCTAATCTGATGGCACCTTCTTGTT GCCATCAGCAATGGAAATGAAAATGTTGCGTTCCTGTTCTCAAAAAAAAAAAAAAAAAA
Homology of Contig U35_14043 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g05730.1 | 137 | 9e-82 | protein|histone H3, putative, expressed |
| Brachypodium v1_2 | Bradi4g07840.1 | 137 | 1e-82 | |
| Arabidopsis v10 | AT5G65360.1 | 136 | 3e-82 | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136 |