barSeed - Barley Seed Development Database

Probe CUST_16681_PI390587928

Source Contig U35_23575

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16681_PI390587928	Hv_44K_v2	GAATTACTTCATTCGACATCTTTGTCCAGGGATATCCATGGTGCACCACCTGGAAGCTTT	662	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68256.8	2139	2e-24	626 - 685	100	60 / 60	plus	ABC14246
MLOC	MLOC_68256.13	2245	2e-24	1242 - 1301	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.12	1436	2e-24	1068 - 1127	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.5	2186	2e-24	1351 - 1410	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.9	2115	2e-24	1424 - 1483	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.11	2171	2e-24	1422 - 1481	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.10	1652	2e-24	1303 - 1362	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.4	2213	2e-24	1476 - 1535	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.3	1931	2e-24	1476 - 1535	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.7	2648	2e-24	1757 - 1816	100	60 / 60	minus	ABC14246
MLOC	MLOC_68256.6	2214	2e-24	1757 - 1816	100	60 / 60	minus	ABC14246
JLOC1	JLOC1_45138.5	2311	8e-25	683 - 742	100	60 / 60	plus
JLOC1	JLOC1_45138.3	2137	8e-25	628 - 687	100	60 / 60	plus
JLOC1	JLOC1_45138.1	1996	8e-25	487 - 546	100	60 / 60	plus
Harvest21	ABC20370	731	3e-25	663 - 722	100	60 / 60	plus
Harvest35	U35_23575	731	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_23575 731 Hv_44K_v2
ACAGCTGCTCTTCCTCCGCTTCTCCCCCCCTTTCCCCCACGCCACTGCCAAGTAGGCCCA
CCATGCACCAGCTGCCTCCTCCTCCCCCCGCGTCGTCGACGTCGCTCGTGTCGCGGGCGC
GCACGGCGATCCACTCCGCCGCCGCGCGCGCCGAGCGCGTGCTCACCGACATTAAAGCCG
ACCTCCGAGATGCGGACGGATCCAGTGGGCACAGGACGCCGTCGCCCAGGACCTCCATGG
ATCGGCAGGTCGACGCCGAAGCGGCCGCCCCCGCCTCGGGTCAGACGCCGGACATGAAGC
CTCCGCCTGATGAGGTCCCTGAAGTAATCCCCTCAGCAGATAAGGATGGCTTGAAGATAG
AACACGGGTCAACTTCGTCATCTAACTTGGCGTTTCCTCCAGCTTCAATAGTTAAACAGT
TGATTGCAGCCATTGAAGATGGAAAAAAATTCAGTTCAATGAATGATATGAAGTTTAATG
GTGACCAATATCTGAAAGAGAAGGGTGGCTTGAGCTTGTCTGTCGTTAAGTCACTTGTTC
GCCGTGAGAAGGAGGACAGATCTAGTTCTGAATTTTTTGGTGACGACGAAACAAAATCCT
TGATGTACTCGTTGTTCAAATTTGCGGAAGAGTTACCCCACGATGAAAGTCAGTGTGGTC
CAGAATTACTTCATTCGACATCTTTGTCCAGGGATATCCATGGTGCACCACCTGGAAGCT
TTGTTCATCAC

Homology of Contig U35_23575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32670.1	667	4e-74	protein\|expressed protein
Brachypodium v1_2	Bradi1g26457.1	670	4e-98
Arabidopsis v10	None