barSeed - Barley Seed Development Database

Probe CUST_16623_PI390587928

Source Contig U35_5356

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16623_PI390587928	Hv_44K_v2	CATGAAACATGAAATCTTGCTCAGTCCTGTTAGAAAAAGAGTTTGCACAAGCGTAAAAAA	1504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376548	1537	3e-21	1484 - 1537	100	54 / 54	plus	ABC13311
JLOC1	JLOC1_43698.1	1031	5e-22	889 - 943	100	55 / 55	plus
Harvest35	U35_5356	1575	3e-25	1505 - 1564	100	60 / 60	plus

Contig Sequence (1575 bp)

>U35_5356 1575 Hv_44K_v2
CGTTGTCTTCCTCGGCGGCGCTGCGCCCGCAGAAACGCTGGACTCCGCACTGGTCTGGTG
TGGTCTGGGCGGCCGCTCGCCGGGCGATCGTCTACCCGATCTGACTCCGAAGGGCGCCAC
GCTGACGGCTCCAGCCGCGGCGTCGGCGGGCGCAGGCGGCGGAGGAGATGGCGCACGAGC
GGCGGGGCGCGGCGGCCGCGCACGACGCTGCAGGGGAAGCACTATTTGTTGATGTAGTAC
ATGAAGCCCCTCTATCTGGTCAGCGGCAGCCTCGAAGCATAGTTGGTGGCACTCTGTACT
GTATCTTATTGGCAGGTTATGCTGGTGTTGTCATAGCAGCTCCATGGATATTTGTTCTTA
TACCAGACATGATCCTTCCGTTGCTATGCAGCTGCAATGTTCTGCTTCTAATTATTACAG
GTATATTCCAACAATATTGGGTCCATCAGGTCACAAAAGTGCGACTACAGGGCTACTATG
ATTTAAGCCAAAAACTGAAGCGCATTGCTCGAGTTCCATTTGCCGCTATTGCTTGCGGTA
CTGCCCTAATGCTCTTAATTCTAGCTTGGCAACCTCAAGTAGAAGTATTTTCAATTTCAC
TTTTGCTCAGGATCGCACTAGTTGTTGAAGTGATATCCGCTGGATGTTTCATGAGCTTAT
ACATAGGGCACATCCATAAATACAACTCTTTGAATGAGCAGCCTGACATTCTACGGCCAC
TTTATTCTGCACTGCAACCATCTAGTTCGTTGGAAGAGATAAGGTACTATGATTCTCGTC
TGTCTGATCAACAAATGGCACTGCTCCAGTACCAGAGGGAGAATATTCATTATCTGAGTG
AAGAGGTGCTTAGGTTGCAGGAAAGCTTAAGTAAGTACCATAGAAGTGTTGCTGCAAGCA
CTCCTCAGGTTGATCTTACTCATCTTTTGGCATCTCGTGATCAAGAACTTCGTGCACTAT
CTGCTGAGATGAATCAAGTGCATTCAGAGCTTCGTCTTGCTCGTGGTTTGATTGCTGAGA
AGGACTCAGAGATCCAGCACATTCGTGGGAACAACAATCAATATGTCGAAGAAAACGAGA
GACTACGAGCTATCCTTGGTGAATGGAGCACTCGAGCAGCAAAGCTTGAGCGAGCGCTTG
AGGCCGAGAGGGTGTCCAACATGGAACTGCAGAAGAACCGCACAAAGCTCAGACGTCAAT
CAACCAGGGAGAAAATACATGACATTCCTCAATCAGAGAATTCCTCCATAGGTGTGCCTT
AGCTTATGTCCCCGGATTGGGTCTATCAATTGAAACATTATGCCGAGGCAGGTAACTAGG
AGAAGATTGCGGCATCGTGTGAAGATTTGAACGTCCAAAGAAGTGAAGATCAGTACACGG
TTGTACGTTGATGTACAGTACCAAATGAGAGATTAGATTCTGTTACAAAAAGAGAGTAAG
AATGTCTGTTTGTTAGCTGTAAATGAGCACATGTAAATATGTAATGCAGCAATTTGAAGT
ACTCCATGAAACATGAAATCTTGCTCAGTCCTGTTAGAAAAAGAGTTTGCACAAGCGTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_5356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53780.1	357	3e-158	protein\|expressed protein
Brachypodium v1_2	Bradi1g46487.2	370	0.0
Arabidopsis v10	AT2G06005.1	355	2e-129	\| Symbols: FIP1 \| FRIGIDA interacting protein 1 \| chr2:2332583-2336022 FORWARD LENGTH=355