barSeed - Barley Seed Development Database

Probe CUST_16581_PI390587928

Source Contig U35_5398

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16581_PI390587928	Hv_44K_v2	TACCTTAGCATGGATGACTTGCTTGGCTTAATTATGGAAAGCTAGGTTGCATGATGACGT	1155	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.282	2.988	1.151	0.833	0.229	0.222
Raw	422.880	377.426	129.351	147.791	14.484	15.273

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61901.1	1534	2e-24	1412 - 1471	100	60 / 60	plus	ABC11229
JLOC1	JLOC1_40474.1	1785	8e-25	1395 - 1454	100	60 / 60	plus
Harvest21	ABC11229	1286	3e-25	1156 - 1215	100	60 / 60	plus	ABC11229
Harvest35	U35_5398	1286	3e-25	1156 - 1215	100	60 / 60	plus

Contig Sequence (1286 bp)

>U35_5398 1286 Hv_44K_v2
CTCACCGCCGCGGCGAACCAACGACGTCTCGCCTCCTCCCACTCCGGCCGCCGTGCGCGC
CATAGGCACAGCAGCCGACACCTAGATCGTGAAATCGGGATGGGTCGCGGTAAGGTGCAG
CTGAAGCGGATAGAGAACAAGATAAATCGGCAGGTGACCTTCTCCAAGCGCCGCAACGGG
CTCCTGAAGAAGGCGCACGAGATCTCCGTCCTCTGTGACGCAGAGGTCGCCGTCATCGTC
TTCTCCCCCAAAGGCAAGCTCTATGAGTACGCCACCGACTCCAGCATGGACAAAATTCTT
GAACGTTATGAGCGCTACTCTTATGCTGAAAAGGCTCTTATTTCAGCTGAATCTGAAAGT
GAGGGGAATTGGTGTCATGAATACAGGAAACTTAAGGCGAAGATTGAGACCATACAGAAG
TGTCACAAGCACCTCATGGGAGAGGATCTGGATTCTCTGAACCTCAAAGAACTCCAACAA
CTGGAGCAGCAGCTGGAGAGTTCATTGAAGCACATCAGATCGAGAAAGAGCCATCTTATG
ATGGAGTCCATTTCTGAGCTACAGAAGAAGGAGAGGTCACTGCAGGAGGAGAACAAGGCC
CTACAGAAGGAACTGGTGGAGAGGCAGAAGGCGGCCAGCAGGCAGCAGCAGCTGCAGCAG
CAGCAACAACAACAACAAATGCAATGGGAGCACCAAGCCCAGACCCAAACCCATACCCAT
ACTCAAAACCAGCCCCAAGCCCAGACTAGCTCATCATCTTCCTCTTTCATGATGAGGGAT
CAGCAGGCCCATGCCCCTCAACAGAACATTTGTAGCTACCCACCGGTGACGATGGGTGGG
GAGGCGACGGCGGCGGCGGCGGCGCCGGAGCAGCAGGCTCAGCTTCGCATATGCCTACCG
CCATGGATGCTGAGCCACCTCAACGCTTGAGGAAGGAAGAGGTTTAATTGCCAAAGCAGC
TGAAACAGCATTAATCGGCACACTAGCAATTAAGCTGCTATGGTTATGTTTGCTTGCCCC
TACCCTTATATATATGATTTGCAAGAAAAAAAATGAGCAGAGAGATCAGGAATGCTGGTT
CGCTGTATAATTTTGTTGCATGTTCAGCAACACGTACCAATTGATGCAAACATGCATGCT
TAGCAACCAACCAATTACCTTAGCATGGATGACTTGCTTGGCTTAATTATGGAAAGCTAG
GTTGCATGATGACGTGTGTATATATATGATATATTTTTATATTTTATCTGAAATCTAAAT
GGGTGAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g01820.2	269	1e-106	protein\|OsMADS15 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi1g59250.1	279	1e-113
Arabidopsis v10	AT1G69120.1	256	1e-67	\| Symbols: AP1, AGL7 \| K-box region and MADS-box transcription factor family protein \| chr1:25982576-25986102 REVERSE LENGTH=256