barSeed - Barley Seed Development Database

Probe CUST_16558_PI390587928

Source Contig U35_10423

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16558_PI390587928	Hv_44K_v2	ATTGGGTTGATGATGGCGTTCTTTTGGTCATAGCTTAGGTAGAAGTAAGTGATTGCATGT	964	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.040	1.966	1.640	1.055	0.294	0.281
Raw	1677.387	4997.710	3458.733	3585.871	349.916	361.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10181.1	300	2e-24	93 - 152	100	60 / 60	plus	ABC19722
JLOC1	JLOC1_6643.1	234	8e-25	107 - 166	100	60 / 60	plus
Harvest21	ABC19722	1047	3e-25	965 - 1024	100	60 / 60	plus	ABC19722
Harvest35	U35_10423	1047	3e-25	965 - 1024	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_10423 1047 Hv_44K_v2
GCAGCAGCAGTACCTACCCGGAGCGAAGAACCACCAGCCTTCCCTAGCACCAACACCCAC
GGAGGCGATGGCAGTCGAGGCCACGACAGAGAAGAACACCGGCACCGGCGCGGCTGGCGG
AGTAGCCCCGGAGAGCGGGGACAGGCGCTCCCGGTTCAGGCGGATCTGCGTCTACTGCGG
CAGCGCCAAGGGCCGAAAGGCCAGCTACCAGGACGCCGCCGTCGAGCTCGGCAAGGAGCT
GGTGGAGAGGGGCATCGACCTGGTCTACGGAGGAGGCTCCATTGGGCTCATGGGCCTGGT
CTCCCACGCAGTTCATGATGGAGGACGACATGTGATTGGGGTCATCCCCAAGTCCTTGAT
GCCCAGAGAGGTCACTGGAGAGCCTGTGGGGGAAGTAAGAGCTGTCTCCGGCATGCATGA
GAGGAAGGCCGAGATGGTTCGCTCTGCTGATGCTTTCATTGCCTTACCCGGTGGCTACGG
GACTTTGGATGAGCTGCTCGAGGTCCTCACCTGGGCCCAACTTGGGATCCACAAGAAGCC
GATTGGGCTTCTGAACGTGGATGGGTTCTACAACTTCTTCCTGTCCTTCATCGACATGGC
TGTGAGTGAAGGATTCATAAAGGAGGACGCGAGGCACCTCGTCATCTCAGCTCCTACCGC
CAAGGAGCTAGTTCTCAAGCTTGAGGAATATGTTCCAGACTACGAGATCGGGTTGGTTTG
GGAGGATCAGGGCCAGATCGGCCACGGCTTCGTGCCAGAGCTGGAGCCTGGCATTGCGTC
GTCATGATATGATTCATCCTGGAAGCGTTTCTGAACTAAGTAACATCTGACCGTGCAAAA
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAATGTGCTAGTCCTTGTCGGT
CGTAGCTTTTGTCGCTGCCGGTGGCATGACAGTGTTAGCATTGAGTTGCAGTAGCAGTGT
TAGCATTGGGTTGATGATGGCGTTCTTTTGGTCATAGCTTAGGTAGAAGTAAGTGATTGC
ATGTNCAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_10423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40630.1	243	2e-140	protein\|uncharacterized protein PA4923, putative, expressed
Brachypodium v1_2	Bradi2g42190.1	245	1e-147
Arabidopsis v10	AT3G53450.1	215	3e-101	Putative lysine decarboxylase family protein \| chr3:19812977-19815430 REVERSE LENGTH=215