- Probe CUST_16546_PI390587928
- Source Contig U35_244
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16546_PI390587928 | Hv_44K_v2 | CCTTCCTCATGCCTCCGATCCGAAATATACATGGCGCCTCAGCTTTGATCCCGTAAAAAA | 394 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.420 | 1.911 | 0.553 | 0.687 | 0.839 | 1.394 |
| Raw | 62569.567 | 75833.833 | 20394.967 | 40069.133 | 16537.833 | 30523.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_43081.1 | 1379 | 5e-22 | 778 - 832 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC47930 | 580 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC34198 | 333 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00697 | 1766 | 3e-25 | 1696 - 1755 | 100 | 60 / 60 | plus | ABC00697 |
| Harvest21 | ABC00616 | 502 | 3e-25 | 432 - 491 | 100 | 60 / 60 | plus | ABC00616 |
| Harvest21 | ABC00611 | 465 | 3e-25 | 395 - 454 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00162 | 382 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC00162 |
| Harvest21 | ABC00063 | 689 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00046 | 821 | 6e-22 | 660 - 719 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00065 | 537 | 2e-21 | 442 - 496 | 98 | 54 / 55 | plus | |
| Harvest35 | U35_265 | 508 | 3e-25 | 437 - 496 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_244 | 465 | 3e-25 | 395 - 454 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32 | 649 | 3e-25 | 524 - 583 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16 | 690 | 3e-25 | 524 - 583 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_21 | 537 | 2e-21 | 442 - 496 | 98 | 54 / 55 | plus |
Contig Sequence (465 bp)
>U35_244 465 Hv_44K_v2 TCCTCACTCCTCACAGCACATCGCTTTCCTTCCCTCGCCACCGCCCACCAAGGAAAGGAG CATGTCTTGCTGCGGCGGCAAGTGCGGGTGCGGCGCCGGCTGCCAGTGCGGCACCGGCTG CGGCGGGTGCAAGATGTTCCCCGACTGCGCCACCTGCAAGTGCGGCACCGCGTGCGGCTG CTCCTGCTGCAGCTGCAAGTGAGCCGGCGCCCGGGAGGCCGGCCGGCAGAGGCGAGCACG AGGATGAGAGGAGGACAAGCAACACCAACCAAGCACCATCACCATCGCCATCGTATCATC AGTAGCCGCTGCATGCGCGCGCGCTGAATAAAATAAAACCGCCGTCGTGTTCGTTAGTTC TGTATGCCCTGCGTGTAGCGTTCGACCAGTGTGTCCTTCCTCATGCCTCCGATCCGAAAT ATACATGGCGCCTCAGCTTTGATCCCGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_244 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |