barSeed - Barley Seed Development Database

Probe CUST_16545_PI390587928

Source Contig U35_246

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16545_PI390587928	Hv_44K_v2	GTATCGCTCCATGTATTATATGTCATGATGGGCAAACACGGATCAAAGTTTTCCCGTAAA	856	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373933	1999	2e-24	1809 - 1868	100	60 / 60	plus	ABC00615 ABC06843
MLOC	MLOC_59102.2	4013	2e-24	2481 - 2540	100	60 / 60	minus	ABC00615 ABC06842 ABC06843
MLOC	MLOC_59102.1	3887	2e-24	2392 - 2451	100	60 / 60	minus	ABC00615 ABC06842 ABC06843
JLOC1	JLOC1_38438.1	3903	8e-25	2392 - 2451	100	60 / 60	minus
Harvest21	ABC00615	1070	3e-25	15 - 74	100	60 / 60	minus	ABC00615
Harvest35	U35_246	930	3e-25	857 - 916	100	60 / 60	plus
Harvest35	U35_377	1053	6e-22	997 - 1053	98	56 / 57	plus

Contig Sequence (930 bp)

>U35_246 930 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTTTTTTTACACGACCAGAACAGACTTCTGGTATTATTGAAA
CAGGATGACTGTGCAGTGTGTACGTATACGTACATGCATACATGCACCTAGTAGTTTATT
AGTACGTGCGTGCAGCTAGCAACAGTAGCATTGGTACGTAACGTAGCTGCGTGTTGCACT
TAGTTGCGGACCTCCGCCCGGTACATGGGCTCCGGGATCTCGTCGGGGCTTGCGCAGCAG
CGGCAGCCACCATGCCCGTGCCCGCAGCACTGGTACCGGCAGCCGCTCCATCGTGCGGTT
TCTAGACACCGGAAACGGCGGCATCGCCGGGGACGCGCTCGCCGCCCAGGTGTGGAAGGA
GCTGTGGCCCACGGACAGGCGGAGGCAGAGGGAATTCTTCTGCTTCGGCATGGACGTCCT
GCTCAAGCTCGACCTCCAAGGTACACGACGCTTCTTCAACGCATTCTTCGACCTCGAGCC
GCACTACTGGCACGGCTTCCTCTCGTCGAGGCTGTTCCTGCCTGAGCTCCTCATGTTCGG
GCTCTCGCTGTTCGCGCACGCCTCAACCACGTCCAAGCTGGAGATCATGGCCAAGGGCAC
CGTGCCCCTTGCCAAGATGGTCGGCAACTTGATACAGGACAAGAATAGGTGATAACTTTA
GAGGGTATGTACCTGCATTTCTCATCTCAAGATCTTCATGGGGTCTTTGATTTTGGCATA
GCTTTTCTCCAATGTATATCTATGATTGGCAACGAGGATTTAAATAGCACTGCTAGCAAC
AGCAGCTTAGGACCTCCAGGGAGATGTAACAATTCTTGCTGCTGCTACGTTATTGAGATG
TATAGTTCATACTGAGGTATCGCTCCATGTATTATATGTCATGATGGGCAAACACGGATC
AAAGTTTTCCCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09750.1	490	1e-62	protein\|lycopene beta cyclase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g06597.1	492	4e-73
Arabidopsis v10	AT3G10230.1	501	6e-57	\| Symbols: LYC \| lycopene cyclase \| chr3:3164340-3165845 REVERSE LENGTH=501