- Probe CUST_16514_PI390587928
- Source Contig U35_268
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16514_PI390587928 | Hv_44K_v2 | AAGGGTACCCTGCGTTCGCGATTGTGAACAAGGTCACCGGCGAATGCATCAAGCACTCCA | 623 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357931 | 1737 | 2e-24 | 799 - 858 | 100 | 60 / 60 | plus | ABC01244 ABC01247 |
| MLOC | AK253026.1 | 1501 | 2e-24 | 799 - 858 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC31028 ABC48413 ABC48525 |
| MLOC | MLOC_59149.2 | 1755 | 2e-24 | 1187 - 1246 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 |
| MLOC | MLOC_59149.3 | 1292 | 2e-24 | 649 - 708 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525 |
| MLOC | MLOC_59149.1 | 1848 | 2e-24 | 1142 - 1201 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525 |
| JLOC1 | JLOC1_38466.2 | 1836 | 8e-25 | 1053 - 1112 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48773 | 504 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01255 | 806 | 3e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01254 | 1509 | 3e-25 | 790 - 849 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01250 | 488 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01244 | 989 | 3e-25 | 264 - 323 | 100 | 60 / 60 | plus | ABC01244 |
| Harvest35 | U35_47594 | 504 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36617 | 462 | 3e-25 | 259 - 318 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_403 | 1205 | 3e-25 | 816 - 875 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_268 | 806 | 3e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26 | 987 | 3e-25 | 264 - 323 | 100 | 60 / 60 | plus |
Contig Sequence (806 bp)
>U35_268 806 Hv_44K_v2 CACGCTATCCTCGCCTGCAAGATGTTCCTGTTCGGGCACCACCACAAGGACCAGGCGCCG GTGGTGTCCGGCCCCAACCAGATCTTCAAGATCTACTGCCGGGCCTACGATGACTACTGC CTCGCCGTCCGCGACGGCGAGGTCGTGCTCGCCCCCGTCAACCCCAAGGACGAGACCCAG CACTGGCTCAAGGACATGCGCTTCAGCACCACCGTCAAGGACGAAGAGGGCATGCCGGCC TTCGCGCTCGTCAACAAGGCCACCGGCCTCGCCGTCAAGCACTCCATCGGCCAGTCCCAC CCCGTGAAGCTGGTGCCGTTCAACCCGGCGTACGAGGACGCATCGGTGCTGTGGACGGAG AGCAAGGACGTGGGCAAGGGCTTCCGCTGCATCCGCATGGTCAACAACACCCGCCGTCGA GTCCGGCGCCACCATGGGCAACAACCCCCACGCCATGGGCGGCGGCCCGCCCGTGCACGC CGTGCGCGTCTTCTGCAAGGCCGGCGAGGACTACAGCCTCACCGCCCGCAACGGTACCGT CTGCCTCGCCCCCACCAACCCCAGGGACGACTACCAGCACTGGATCAAGGACATGAGGCA CAGCAACAAGATCAGGGACGAGGAAGGGTACCCTGCGTTCGCGATTGTGAACAAGGTCAC CGGCGAATGCATCAAGCACTCCACCGGCCAGGGCCACCCCGTGAAGCTGGTGCCGTACAA CCCGGCGTACCAGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGTGGGCAAGGGCTT CCGCTGCGTGCGCATGGTGAACAACA
Homology of Contig U35_268 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g48490.2 | 344 | 1e-71 | protein|stress responsive protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g17460.1 | 346 | 2e-78 | |
| Arabidopsis v10 | None |