barSeed - Barley Seed Development Database

Probe CUST_16505_PI390587928

Source Contig U35_30405

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16505_PI390587928	Hv_44K_v2	AACTACATGGGCGACGACAACTTCCCCACCGAGGACCTCCGCAAGCTGCAGCTCATCTCC	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361411	1806	2e-24	517 - 576	100	60 / 60	plus	ABC02157 ABC13200 ABC16177
MLOC	AK376768	1616	2e-24	602 - 661	100	60 / 60	plus	ABC02157 ABC13200 ABC16177
MLOC	MLOC_47471.3	283	2e-24	110 - 169	100	60 / 60	minus	None
MLOC	MLOC_47471.1	332	2e-24	111 - 170	100	60 / 60	minus	None
MLOC	MLOC_47471.2	328	2e-24	111 - 170	100	60 / 60	minus	None
JLOC1	JLOC1_30605.1	291	8e-25	159 - 218	100	60 / 60	plus
Harvest21	ABC30312	556	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_30405	556	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_30405 556 Hv_44K_v2
TTCCCGGGCGCCTCCCGTCCCGATTAAACCCTACTCTCTCTCTCCGCCTCGCGTCTTTTC
CGCCCCCCTCCCTCTGGAAAACAATCCCGGGGCCGACGGCCGGAAGGAAATCCGTAGAAT
TCGTCCGGGGATTTTCGGTTTTTTTTCCCTTGCGTGGAGGGATTTTGATGGAGGTGGCGG
CGGCCGAGTGCGCGGGCGGCGGCCTGCGGGAGGTTAAGAAGGAGGCCGCCGCCGCCGGCG
ACGTGTTCCTCGTCGACGACCTCCTCGACCTGCCCTGCGACGACGACGGGGAGGAGGAGG
ACGAGGGCGGCGGGGTTCGCCGACGGGGCCGACTGCAGCGCCGGCGGCGCCGGCAACGCG
TCGGCCGACTCCTCCACCGTCACCGCCGTCGACAGCTGCAGCAACTCCCTCTCCGGCGGC
CTCGCCGACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGTACGACCAGTTGGCGGAGCTG
GAATGGCTGTCCAACTACATGGGCGACGACAACTTCCCCACCGAGGACCTCCGCAAGCTG
CAGCTCATCTCCGGCA

Homology of Contig U35_30405 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None