barSeed - Barley Seed Development Database

Probe CUST_16485_PI390587928

Source Contig U35_277

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16485_PI390587928	Hv_44K_v2	AACCTCTGTACCGTGGCGTCATCCTTGCCTCTATGCGAATGGTATTTACTGTCTAAAAAA	1322	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.932	0.949	2.350	2.004	0.830	0.817
Raw	4486.063	7282.023	16106.867	21568.000	3057.560	3362.527

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3864.2	1642	5e-22	1381 - 1435	100	55 / 55	plus
JLOC1	JLOC1_3864.1	1125	5e-22	864 - 918	100	55 / 55	plus
Harvest21	ABC31028	572	2e-22	402 - 456	100	55 / 55	plus	ABC31028
Harvest21	ABC01247	1439	2e-22	1343 - 1397	100	55 / 55	plus	ABC01247
Harvest35	U35_277	1432	3e-25	1323 - 1382	100	60 / 60	plus
Harvest35	U35_30908	572	2e-22	402 - 456	100	55 / 55	plus

Contig Sequence (1432 bp)

>U35_277 1432 Hv_44K_v2
GTCCGAAACCTTTCTCCTTCTGTCCCGCAAACCCCCGAGAGATCACAGGATGTTCGGCTT
CGGTCACCACGGCCACCATGGCCAGAACCCCCCCGCCCACGCTCCGCCCGCCGCCGGCGG
CAACCAGCCCACCTTCAAGATCTTCTGCAAGGCCGACGAGGGCTACTGCCTCTCCGTCCG
CGACGGCAACGTCGTCCTCGCCCCCTCCAACCCCCGCGACGAGCACCAGCACTGGTTCAA
GGACATGCGCTTCAGCACCCAGATCAAGGACGAGGAGGGTAACCCCGCCTTCGCCATCGT
CAACAAGGCCACTGGCCTCGCCGTCAAGCACTCCCTCGGCCAGTCCCACCCGGTGAAGCT
GGTGCCATTCAACCCGGAGTTCCTCGACGAGTCCGTGATGTGGACGGAGAGCGGCGACGT
CGGCAAGGGCTTCCGCTGCATTCGCATGGTGAACAACATCCGCCTCAACTTCGACGCCCT
CAACGGCGACAAGGACCACGGCGGCGTGCACGACGGCACCACCGTCGTCCTCTGGGAGTG
GGCCAAGGGCGACAACCAGAGCTGGAAGATCCTCCCCTGGGGCGAAGAGGCCTACGCCGG
AGGCAGCGCCAACGCACCACGCGGCGGCTCCTCAGAGCCCACCGTGCGCATCTTCTGCAA
GGCCGACGAGGGCTTCAGCGCCACCGTCCGCAACGGCACCGTCGTCCTCGCACCTAGCAA
CCCCCGTGACGAGTACCAGCACTGGTTCAAGGACATGAGGCACAGCAACCGCATCAAGGA
CGAGGAAGGCTACCCGGCCTTCGCCCTCATCAACAAGGTGACAGGCGAGGCCCTCAAGCA
CTCCCAAGGCGAGGGCCACCCTGTGAAGCTGGTGCCATACAACCCCAACTACCAGGACGA
GTCGGTGTTGTGGACTGAGAGCCGCGACGTGGGCGCCGGCTTCAGGTGCATCCGCATGGT
GAACAACATCTACCTCAACTTCGACGCTCTCCACGGCGACAAGGAGCACGGCGGCGTGCG
CGACGGCACCTCCCTCGTGCTGTGGAAGTGGTGCGAGGGAGACAACCAGCGCTGGAAGAT
CCTCCCCTGGTAAACGTGTCATGCTGCTGAAGCTGCATTGATCGCCACCGGGACACGGAG
TTGGTAGAGATCAGCCTGTGATCTGTTGCCGTGTCGGTAGAATAAAAGTCGTGTGCGGTC
GGTGGTGGTGATGCGTCCGTGAGTTTGTGTGTTTAGTTTCTGTCCTGTCGTTGTGTCCTG
CTAATGCGAGTGTAAGCATTTGGCACCTGTGCTTGTTTTTCAGACCATGGATCCGTGATG
AGAACCTCTGTACCGTGGCGTCATCCTTGCCTCTATGCGAATGGTATTTACTGTCTAAAA
AAAAAAAAAAAAAACATCGGTGCGGATTTTTGGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21040.2	349	0.0	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi1g63610.1	354	0.0
Arabidopsis v10	AT2G39050.1	317	4e-62	hydroxyproline-rich glycoprotein family protein \| chr2:16303427-16305336 FORWARD LENGTH=317