barSeed - Barley Seed Development Database

Probe CUST_16461_PI390587928

Source Contig U35_5178

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16461_PI390587928	Hv_44K_v2	TCTGTGTGGTACCAGCTACATTGTAATTCAAACGTACACTGTTCCATGTTTTTCTGTTAA	555	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.525	1.645	1.018	0.847	0.167	0.331
Raw	147.449	250.049	136.888	178.270	12.682	26.921

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13498	1064	3e-25	990 - 1049	100	60 / 60	plus	ABC13498
Harvest35	U35_5178	630	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_5178 630 Hv_44K_v2
TGGTTCTGGTGATTATTAGTGGACGAAAGAATACCATACTCGACAAGCGAGGGGATACAG
TTGGTGATCTTGTACGAGATGCCTGGCGTATGTGGAAGGAACAAAGGTTGCATGAGCTTG
TGGATCCGCTGTTAGGGGACGGATATGAAGTCGCTGAGATAAAGAGATGTGCTCAGGTGG
CACTGCTTTGTGCTCAGGAAGACCCTGCAGATCGGCCCGCCATGACAGATGTTGCTGCAA
TGCTGAACTCTGAAAACATAATAAGCTTACCGATAGAGCCTACGCAGCCCGCTGCACTGA
TGCTCGAGTGCGCCGACAGAGACATGGCGTCGACATACATGGACCAATCAAGCACGACAA
TAGACATAACCATAACGAGTTCAGCTCCAATGTCGACTAGAGTTCGAATCATTCTAGACC
CGGAGGTTTGATATGATGGAGAACATTCAGTAGAATATATAACTAAAAAAACGTGAGTGA
GGATGGGCTTTTTACGGCTCAGGTAGTGTACATATTCGAGATATCAAGACCAGTTTTGTG
GAGTGAAAATAAACATCTGTGTGGTACCAGCTACATTGTAATTCAAACGTACACTGTTCC
ATGTTTTTCTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g33457.2	611	1e-56
Arabidopsis v10	None