barSeed - Barley Seed Development Database

Probe CUST_1643_PI390587928

Source Contig U35_14050

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1643_PI390587928	Hv_44K_v2	TGGTGGGTTCTTATCTGAACCTTGCATTTTATGTTCGAAAATTAGTGATTGCGTGAACTG	670	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77754.1	491	2e-24	399 - 458	100	60 / 60	minus	ABC00126 ABC00136
JLOC1	JLOC1_51841.1	352	8e-25	260 - 319	100	60 / 60	minus
Harvest21	ABC29517	109	3e-25	28 - 87	100	60 / 60	plus	ABC29517
Harvest21	ABC00136	853	3e-25	713 - 772	100	60 / 60	plus	ABC00136
Harvest35	U35_14050	811	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (811 bp)

>U35_14050 811 Hv_44K_v2
GAAAGCTGCAACCTCCCCCTCTCGGCGAATTTGGGGTTTCCGAAGCGCGCGAGGTGAACC
AAAGTTTTGATCATGGCTCGTACTAAGCAGACTGCTCGTAAGTCCACTGGAGGGAAGGCT
CCAAGGAAGCAGCTAGCCACCAAGGCTGCCCGCAAGTCTGCTCCCACAACTGGAGGAGTG
AAGAAGCCTCACCGTTACCGCCCTGGAACTGTTGCTCTTCGTGAGATCCGCAAGTACCAG
AAGAGCACGGAGCTGCTCATAAGGAAGCTTCCATTCCAGAGGCTTGTCAGGGAGATTGCC
CAGGACTTCAAGACTGACCTCCGCTTCCAGAGCCATGCGGTGCTTGCCCTTCAGGAGGCT
GCAGAGGCCTACCTGGTGGGTCTCTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAG
CGTGTGACCATCATGCCCAAGGACATTCAGCTGGCTAGGAGGATCCGTGGCGAGAGGGCT
TAAGCTGCTTTGCCTGTGGGAATGGCTCTGGTGGGCATAGCTCCGTGTGTCTGCTTTTGC
TGCTGAACACTTATCATGTGTCGTGAACTACTAATACTAGTTGTCTGTAGTAATATGTCA
GTACTGTACTCTGTCGTACTATGTTCTAGAGCTGGATCATTTGTTCGTTGGTCGTCCTGA
AGCGTCCACATGGTGGGTTCTTATCTGAACCTTGCATTTTATGTTCGAAAATTAGTGATT
GCGTGAACTGTTATTAAAAAAAAAAAAAATGTTTTATTTGTATCTCTGTGATGCAAGTTT
GAATTTGGGGGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14050 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04030.1	137	8e-83	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi5g11920.3	137	4e-83
Arabidopsis v10	AT5G10980.1	136	3e-83	Histone superfamily protein \| chr5:3472591-3473349 REVERSE LENGTH=136