barSeed - Barley Seed Development Database

Probe CUST_16428_PI390587928

Source Contig U35_10212

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16428_PI390587928	Hv_44K_v2	CAGCTGTGTTTCGGAAGGGCAAGTTGAGGAAAATGTTGGTGAACATAACTGCTCTGTGAA	757	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253078.1	2499	2e-24	791 - 850	100	60 / 60	plus	ABC13445
MLOC	MLOC_64864.6	1805	2e-24	28 - 87	100	60 / 60	plus	ABC13445
MLOC	MLOC_64864.5	3000	2e-24	741 - 800	100	60 / 60	plus	ABC13445
MLOC	MLOC_64864.4	3023	2e-24	767 - 826	100	60 / 60	plus	ABC13445
MLOC	MLOC_64864.3	1871	2e-24	767 - 826	100	60 / 60	plus	None
MLOC	MLOC_64864.2	2426	2e-24	822 - 881	100	60 / 60	plus	ABC13445
MLOC	MLOC_64864.1	2599	2e-24	870 - 929	100	60 / 60	plus	ABC13445
JLOC1	JLOC1_42631.3	2600	8e-25	805 - 864	100	60 / 60	plus
JLOC1	JLOC1_42631.2	2686	8e-25	895 - 954	100	60 / 60	plus
JLOC1	JLOC1_42631.1	2743	8e-25	952 - 1011	100	60 / 60	plus
Harvest21	ABC21331	862	3e-25	758 - 817	100	60 / 60	plus
Harvest35	U35_10212	862	3e-25	758 - 817	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_10212 862 Hv_44K_v2
GATCTCTCTCCGCCGCCTCGCCGTCGTCGCCGCCTCACGGCCGGAACGTCGCCGCCACTC
ACGCGCCTCGACGCCGCCACTCACGCGCCTCGACGCCGCCGCCATCGCTATCCCTGCTCT
CTCCACCCGTCCGCGAGCTTCGACATCGGTCTTTGAGACCAGTCCCCGCCGGTTGATGCC
CCTTGTTAAATCCGCCCGTCCGCGACCCTGAGGCGCTCGGCGGCGGCGAGGAGATGCCTG
GCCTACCTTTACCTGCCCGGGACGCAGCGGACACTGGGTGTGAATTTAGTTACCCTCAGT
CTGCAGACCAGATGCGACAGCAACAGTTGAGAGCTCGATTATCTCCAGATGAGCAGCTTG
CTGCTGAAGAAAGTTTCGCGTTGTACTGCAAGCCGGTTGAGCTATACAATATCATTCAAC
GGCGAGCCATTAGGAATCCCGCTTTTCTGCAAAGATGCCTTCACTACAAGATACATGCAA
GCCGAAAAAAGAGGATTCAGATAACTGTATCACTATCTCGAGGTACAAATACCGAGTTGC
CAGAACAGAATGTCTTTCCTCTTTACGTTCTATTAGCTACACCTACTACTAATATTTCAC
TTGAAGGGCATTCTCCGATATATCGATTCAGTCGGGCCTGTTTGCTTACGTCTTTTAGTG
AATGTGGTAGTAAAGGTCGCACCAAAGCTACATTCACAATTCCAGACATCAAGAATTTAT
CTACCTCCCGAGCTTGCAACCTTAACATTATCCTTATCAGCTGTGTTTCGGAAGGGCAAG
TTGAGGAAAATGTTGGTGAACATAACTGCTCTGTGAACCATNNTGGAAGGCTCTGCTCTC
CAAAAGCTTGAAGGGAAATGCT

Homology of Contig U35_10212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g13630.1	605	2e-79	protein\|ZOS9-03 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi3g03106.1	647	1e-97
Arabidopsis v10	None