- Probe CUST_16409_PI390587928
- Source Contig U35_22201
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16409_PI390587928 | Hv_44K_v2 | TATTTTGTTTCCATGTGTCGAGCGAGTAAACAAACACCGTCCAGGAACTATTCCCCGAAA | 647 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.702 | 2.357 | 1.039 | 0.795 | 0.292 | 0.348 |
| Raw | 81.592 | 103.401 | 42.240 | 52.240 | 6.401 | 7.995 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64195.25 | 2562 | 2e-24 | 2491 - 2550 | 100 | 60 / 60 | plus | ABC13445 ABC20884 ABC39307 |
| MLOC | MLOC_64195.8 | 2514 | 2e-24 | 2443 - 2502 | 100 | 60 / 60 | plus | ABC13445 ABC20884 ABC39307 |
| MLOC | MLOC_64195.9 | 2693 | 2e-24 | 2622 - 2681 | 100 | 60 / 60 | plus | ABC13445 ABC20884 ABC39307 |
| JLOC1 | JLOC1_42122.23 | 846 | 8e-25 | 702 - 761 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.22 | 2510 | 8e-25 | 2366 - 2425 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.21 | 2565 | 8e-25 | 2421 - 2480 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.20 | 2621 | 8e-25 | 2477 - 2536 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.19 | 2708 | 8e-25 | 2564 - 2623 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.18 | 2723 | 8e-25 | 2579 - 2638 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.17 | 3552 | 8e-25 | 3408 - 3467 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.16 | 2507 | 8e-25 | 2363 - 2422 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.15 | 2989 | 8e-25 | 2845 - 2904 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.14 | 2575 | 8e-25 | 2431 - 2490 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.13 | 3685 | 8e-25 | 3541 - 3600 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.12 | 3861 | 8e-25 | 3717 - 3776 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.11 | 3337 | 8e-25 | 3193 - 3252 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.10 | 2916 | 8e-25 | 2772 - 2831 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.9 | 2907 | 8e-25 | 2763 - 2822 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.8 | 3322 | 8e-25 | 3178 - 3237 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.7 | 2841 | 8e-25 | 2697 - 2756 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.6 | 3419 | 8e-25 | 3275 - 3334 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.5 | 3764 | 8e-25 | 3620 - 3679 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.4 | 2495 | 8e-25 | 2351 - 2410 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.3 | 3860 | 8e-25 | 3716 - 3775 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.2 | 3011 | 8e-25 | 2867 - 2926 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42122.1 | 3441 | 8e-25 | 3297 - 3356 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22201 | 721 | 3e-25 | 648 - 707 | 100 | 60 / 60 | plus |
Contig Sequence (721 bp)
>U35_22201 721 Hv_44K_v2 CTGGTGCTGGCGTTTTGTCATGATTAAGCTGTGGAACCACAACCTACTGGATGCGCGCGC CATGAACACCTGCAACATGATTCTTGAGGGATACCACCCCCACCCTAAGAAGAAGACGTG AGTCGATCGAGCACCTGTGGATCATCCCATTCCCCACCCCAAGAAGATGTGAGTCGATCG AGCACCTGTGGATCATCCCATTCCCCACCCCAAGAAGATGTGAGTCGATCGAGCACCTGT GGATCATCCCATTCCCCGATCGAGCACCTGTGGATCATCCCATTCCCCACCCCAAGAAGA AGATGTGAGTCGATCGAGCACCTTCCATTCCATGGGGGTTGGTTTTGGTTGGTTACTTTT AAACAGAATCAGAGGATCCATGTTTGTAGCCCTGAAAGAAGCTTTTTCTTTCTTTCTTTT GACAGTTAAAAACAGCAGGAGAGGCTCCTACTGGTGTTTCATTTCCAAAAGTATGTTACA GGGTAATTACAAAGCCATGGCTTGGCAAGATGTTGGTAGATTTGAGATGATTCCATCCAC AAATGAGGATTGTTTAGGGAGGGCTATTCTCATTGAGTGTTTACTTTAGCTAGGATTGAT CTGCCTGTTGAGGTTTTTTTTTTCATAAAACAAGTCTTTTATTTATTTATTTTGTTTCCA TGTGTCGAGCGAGTAAACAAACACCGTCCAGGAACTATTCCCCGAAAAAAAAAAAAAAAA A
Homology of Contig U35_22201 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |