barSeed - Barley Seed Development Database

Probe CUST_1637_PI390587928

Source Contig U35_14056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1637_PI390587928	Hv_44K_v2	CCCCTTCATTGTATTATGCCATCCTTGTTTAATCATAGATCTGTCTCTTTCATCAAAAAA	862	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68309.2	1480	9e-22	1287 - 1341	100	55 / 55	plus	ABC00179 ABC00609
MLOC	AK360797	1122	3e-21	1069 - 1122	100	54 / 54	plus	ABC00179 ABC00609
JLOC1	JLOC1_45185.2	908	5e-22	662 - 716	100	55 / 55	plus
JLOC1	JLOC1_45185.1	1434	5e-22	1287 - 1341	100	55 / 55	plus
Harvest21	ABC00179	474	1e-23	408 - 467	98	59 / 60	plus	ABC00179
Harvest35	U35_14056	934	3e-25	863 - 922	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_14056 934 Hv_44K_v2
CCCCCCCCGCCAAGAAGGCAGCCGCGCCCGCCGCGGCGCCGACCACCACGCCCGTCGCCG
CCACCCCACCGGCCGCCGCAGCGGCTCCCACCACGCCCGCAACCCCCGCTCCTGCCGCGG
CGCCACCCACCAAGGCCACACCGGCACCAGCCAAGGCTCCCGCCGCGGCCCCGCCCACCA
AGGCCTCCTCGCCCCCTGCCCCGGCGCCCAAGGCCAGCACCCCGCCGGTAGAGGCCCCCG
TCGCCGCCCCGCCCGCTCCCGTCGCCGAGGCACCCGCCACCATTCCCACCAAGCCCGACG
CCCCCGCGCCCGCGCCGGCCAAGAAGAAGAAGTCCTCCAAGAAGAAGAAGAAGAGCAAGG
CCCCGGCCCCTGCTCCCGTCGCCGCTGAGGCCCCCACCAAGTCCAAGAAGGCCAAGGCCC
CCGCCGCCTCCGACGACTCCGAAGCCCCAGGCCCCGCACTCGATGCTGCCGCCGACGACA
CCGCGGGCGCTGTCCAGAGCATGGCAGGAAGCATCATGTCGGCGTGCGCGATGGCGCTGG
GCCTCGTCGCCCTCCTCGCCTAGACGACGACGAGCAAAGCCGGCGAATGCGGGAGGCCCG
GCCCGGCCCCCGGCCCCGTCAAGGCCCGCCACGAGGACACGCAATCATGCACGCACCGGG
CCTCTTTCGGACGAGCTGTCCGTCTTTGCGCGCCACCGCATTTTGTGCTGTCTGTATTTT
TTTCTAACTGGCCGGACGGGCCGGCCTCTCCTGTGTAGCCCCGCTCACGCGCGTTCGTTC
GCCTCGGATTCTTTCTTTCTTGCCCCCCTCCCTGTACCGCCAAATTGATGAGATTTGATT
TATATTTTTATTTATCATTACTCCCCTTCATTGTATTATGCCATCCTTGTTTAATCATAG
ATCTGTCTCTTTCATCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None