barSeed - Barley Seed Development Database

Probe CUST_16255_PI390587928

Source Contig U35_18304

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16255_PI390587928	Hv_44K_v2	ACTTCTTATGATTCAGCGCACTCTCAGAAACAATTGGCACGAGGACATGCCAATATTGGG	1464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365625	2525	2e-23	1431 - 1488	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.6	2310	2e-23	1373 - 1430	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.3	2063	2e-23	1554 - 1611	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.1	2649	2e-23	1684 - 1741	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.2	2652	2e-23	1684 - 1741	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.4	2557	2e-23	1621 - 1678	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.5	2560	2e-23	1621 - 1678	100	58 / 58	plus	ABC08614 ABC10173 ABC10633
JLOC1	JLOC1_40012.2	2385	1e-23	1498 - 1555	100	58 / 58	plus
JLOC1	JLOC1_40012.1	2523	1e-23	1535 - 1592	100	58 / 58	plus
Harvest21	ABC08614	1528	3e-25	1449 - 1508	100	60 / 60	plus	ABC08614
Harvest35	U35_18304	1544	3e-25	1465 - 1524	100	60 / 60	plus

Contig Sequence (1544 bp)

>U35_18304 1544 Hv_44K_v2
GCTCTCTCTCTCCATCTCTTGCTTTGCCTCTAGTCGTCGCCCAGTCGCTGCCGCACTGCT
CCGGCTCGAGCTCGACGCGGGAAGGAGCAGCCCGGGCCTTCTCCAACCCTCGTGCCGCTA
TCGTTTGCCAGTTACTAGTTGCTAAGATCTGACCCACGGCGCCGGCAAGGTTGTGGCGCC
GCGGAGATGCAGAGGCAGGGGCGCCACATGGAGCGGTCTGGCTCCAAGCGGGCGCTAGAC
CCTGGCGGCAGTGGCGGAGGCGGCGGCGACGACGAACGTGATCCTAAACGGCCGCGCGTC
CCGGCCCTCGCCAGTGTCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGT
TCATCCCTGGAGCCGATTCTCCGAAGAGTTGTCAGCGAAGAAGTAGAGCGTGCTTTAGCC
AAATTGGGACCTGCAGCAGCACCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGAATT
GAGGGCCCCAATGGTAGTAACCTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCACTC
TTTACTGGAGGAAAAGTGGAAGGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTAGAT
GCAAACACTGGACATGTCGTCACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTTCTT
GTTCTCGAGGGTGATTTTAATAAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTTGAG
AGCCACATTGTGAAAGAACGTGAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCATGTG
ACACTTAAAGAAGGCGTAGGGACCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGG
ATAAGGAGCAGAAAATTCAGACTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAATT
CGTATCAAAGAGGCGAAGACAGAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTAC
AAGAAACATTACCCTCCTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAG
GACGGTGCATTCCACGGGAAACTAAACTCAAACGGAATCTATACAGTTGAACATTTTCTT
CAACTTCTTGTTAAAGATCAACAGAAGTTAAGAAGTATCCTTGGTACTGGCATGTCAAAT
AAGATGTGGGAAAGTCTTGTTGAACATGCAAAAACTTGTGTTCTGAGTGGCAAACATTAT
ATATATTACTCGAAGGATACAGCAAGTGTTGGTGCAATATTCAATAACATATATGAGTTC
ACTGGTTTGATTGCTGATGATCAGTTTATTTCAACGGAAAATCTTACTGAAAACCAGAGG
GTGTTTGCGGATACGTTGGTGAAGCAAGCATACGATGATTGGATCAACGTTGTAGAATAT
GATGGCAAGGGATTGTTGAAATTTAAGCAGAAAAAGAAATCTGTCACAACAAGAAGTGAT
GTTGCAAATGTCTCTACAAGCTACACTTCTTATGATTCAGCGCACTCTCAGAAACAATTG
GCACGAGGACATGCCAATATTGGGCGATCTCTCATGAGCAGTAC

Homology of Contig U35_18304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g36660.1	653	0.0	protein\|calmodulin binding protein, putative, expressed
Brachypodium v1_2	Bradi3g46060.2	650	0.0
Arabidopsis v10	AT2G18750.1	622	5e-177	Calmodulin-binding protein \| chr2:8125827-8128363 FORWARD LENGTH=622