barSeed - Barley Seed Development Database

Probe CUST_16249_PI390587928

Source Contig U35_20621

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16249_PI390587928	Hv_44K_v2	CAGCAAGTCTTTATTTGAGCAAGTTTGTTTTACCTTCACTACAGGAAATAACTCTACAGT	719	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11897.2	3330	2e-24	3083 - 3142	100	60 / 60	plus	ABC13704 ABC21141 ABC26541 ABC50975
MLOC	MLOC_11897.1	1920	2e-24	1832 - 1891	100	60 / 60	plus	ABC13704 ABC21141 ABC26541 ABC50975
JLOC1	JLOC1_7933.6	2108	8e-25	1806 - 1865	100	60 / 60	plus
JLOC1	JLOC1_7933.5	1309	8e-25	1007 - 1066	100	60 / 60	plus
JLOC1	JLOC1_7933.4	2506	8e-25	2204 - 2263	100	60 / 60	plus
JLOC1	JLOC1_7933.3	1977	8e-25	1675 - 1734	100	60 / 60	plus
JLOC1	JLOC1_7933.2	2519	8e-25	2217 - 2276	100	60 / 60	plus
Harvest21	ABC13704	829	3e-25	51 - 110	100	60 / 60	minus	ABC13704
Harvest35	U35_20621	829	3e-25	720 - 779	100	60 / 60	plus

Contig Sequence (829 bp)

>U35_20621 829 Hv_44K_v2
CCTGACTACAGCTTCTCCTTTGCTATGTCTTCTTGCTTGATTGCAATGCTGCCAAAAGGG
TTTTATGACAGGGTTGAAGATGGCAGCATTATTCTTAAGAAATCCAAGCGGTTCAGCTTC
TGCAGTGATGGGATCATCCTGGAGGATGGAGAAGAAAGCATAAAGAGTGATATCGTAATT
CTAGCAACAGGATTCAAAGGAGACCAGAAGCTCAGGGACATCTTCACAGCAAACTGGTGC
AGAAATATAGTGGCAGGATCATCAGATACATCGGTTCCACTATACAGAGAATGCATCCAT
CCTCGAATTCCTCAGTTGGCAATAGTCGGATATTCCGAGAGCCTTACCGACATATATGTC
TCAGAGAGGATAGCTAATTGGGTAATCCATTTCCTGGCTGGTGGCTTCCAGTTGCCAAGC
ATAAGACGCATGGAAGGGAGTGTAGCAGAGTGGGCAAAGTACAAGAATCTTTACAATGGA
AAGTATTTTAGACGATCTTGTTTAAGCACTGTGAATATTTGGTTTAATGATTTGTTGTGC
CAAGATATCGGATGCAATCCTAGAAGAAAGAAAGGATTCCTCGCTGAATGGTTCCAGCCA
TATGGACCTGCTGATTATGCAGGCCTTTCCTGAAGACAGTAGCATATCTGTCACTTGTGT
ACTCATAGCAAAAGAATAAGACAAAAGAGCTGCTACCTTAACGGCTCTACAGAATATTTC
AGCAAGTCTTTATTTGAGCAAGTTTGTTTTACCTTCACTACAGGAAATAACTCTACAGTT
TTCNAGCAGTACATTTTAATTAGAGCATCTCCTAAAAAAAAAAAAAAAA

Homology of Contig U35_20621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37620.1	520	8e-129	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi4g37110.1	520	2e-131
Arabidopsis v10	None