barSeed - Barley Seed Development Database

Probe CUST_16236_PI390587928

Source Contig U35_18314

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16236_PI390587928	Hv_44K_v2	TTGAACAACTGAAAATTGCCACAGAACTTTCCCTATGGCAGGAAGCTTTCCGATCTGTGG	844	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62056.2	3596	2e-24	1017 - 1076	100	60 / 60	plus	ABC02110 ABC11880 ABC32694 ABC37589 ABC49886
MLOC	MLOC_62056.3	2438	2e-24	1599 - 1658	100	60 / 60	minus	ABC02110 ABC11880
MLOC	MLOC_62056.4	2569	2e-24	1597 - 1656	100	60 / 60	minus	ABC02110 ABC11880
JLOC1	JLOC1_40592.2	3662	8e-25	935 - 994	100	60 / 60	plus
JLOC1	JLOC1_40592.1	3468	8e-25	741 - 800	100	60 / 60	plus
Harvest21	ABC13320	882	3e-25	796 - 855	100	60 / 60	plus
Harvest35	U35_18314	931	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_18314 931 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACATCCACTCCCCCCTCCGCCTCCAGATCCTCCCGCGCG
CCCCCGCCTCCGCCGCCCTCCGCCCCCCGTCTCCGGCGATCTACAGGAGTAGATCGGCCC
CGGAGACCCCTCGCCCCGGCCATGGCGACCTTCGCGAAGCCCGAGAACGCGCTCAAGAGA
GCGGAGGAGTTGATACATGTTGGACAAAAGCAGGCTGCGCTGCAGGCGCTGCATGATCTC
ATTACATCAAAGAGATACAGATCATGGCAAAAGCCTCTTGAGAAGATCATGATGAAGTAT
GTGGAGCTGTGTGTTGATCTAAGGAAGGGCAGATTTGCCAAAGATGGCCTTATTCAGTAC
AGAATTGTCTGCCAGCAAGTCAACGTGTCATCTCTGGAGGAGGTCATAAAACACTTTATG
CAGCTGTCCAATGAGAAAGCTGAGGAAGCCAGGAATCAGGCACAAGCACTGGAAGATGCT
CTGGATGTCGAAGATCTTGAAGCTGACAAGCGTCCGGAGGACTTGATGCTCAGTTATGTT
AGCGGAGAGAAAGGCAAGGACCGATCAGACAGGGAGTTTGTTACTCCATGGTTTAAGTTT
CTGTGGGAGACATACAGGACAGTGCTCGAGATACTGAGAAATAATTCAAAGCTTGAAGCA
CTATATGCTATGACTGCGCACAAGGCTTTTCAATTTTGTAAGCAGTATAAAAGATCCACC
GAGTTCCGTAGATTGTGTGAGATCATTAGAAACCATCTTGCAAATTTGAACAAATATCGC
GACCAGCGTGATCGTCCTGATCTGACTGCCCCCGAAAGCTGTCAGCTGTATCTTGATACT
AGGGTTGAACAACTGAAAATTGCCACAGAACTTTCCCTATGGCAGGAAGCTTTCCGATCT
GTGGAGGATATCCATGGCTTGATGAGCTTGG

Homology of Contig U35_18314 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03070.2	985	6e-163	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g01550.1	984	2e-164
Arabidopsis v10	AT4G11420.1	987	2e-146	\| Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 \| eukaryotic translation initiation factor 3A \| chr4:6947834-6952053 REVERSE LENGTH=987