barSeed - Barley Seed Development Database

Probe CUST_16181_PI390587928

Source Contig U35_15590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16181_PI390587928	Hv_44K_v2	AATGCTCGTGATGTACCGCTATCTTCGACTAAATAAAAGATTTGCCATTTTCCATTATTG	1050	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.069	4.033	1.051	0.823	0.315	0.442
Raw	3929.990	4448.257	1183.712	1568.337	184.595	298.600

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38318.1	950	2e-24	707 - 766	100	60 / 60	plus	ABC04435 ABC09075
MLOC	AK372660	707	3e-22	652 - 707	100	56 / 56	plus	ABC04435 ABC09075
JLOC1	JLOC1_24908.1	851	8e-25	707 - 766	100	60 / 60	plus
Harvest21	ABC09076	601	3e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC09075	1145	3e-25	1068 - 1127	100	60 / 60	plus	ABC09075
Harvest35	U35_15590	1195	3e-25	1051 - 1110	100	60 / 60	plus

Contig Sequence (1195 bp)

>U35_15590 1195 Hv_44K_v2
CAGCAACCGCGCGCCTGGAAGTGTACTTTGTACACGTTCATTGGCGTAGCTAGCTAGGCA
GACATGGCGAAGAAAGTGCAAGTGATCGCCATGCTCCTGGCCCTGAACCTTCTCTTCTTC
ACCTTCGCCAACGCCACTGGACGTCCCTGCCCACCTAGCGGGGGCAGCGGCGGGGGAGGA
GGGGGCAGCGGGGGCGGGGGAGGCGGCAATTGTAATGGCGGGAACTGTGGTGGGGGCGGA
AACGGTGGGGGCGGCAATTGTGGTGGCGGGAACTGTGGTGGGGGCGGAAACGGTGGTGGT
GGGACTGGTGGAGGCGGAAACGGTGGTGGTGGCAATGGTGGAGGCGGAAACTGTCCGGGA
GGCGGAAACTGTGGCGGGAACGGTGGCGGTGGGAATGATGGCGGTGGGAATGGTGGTGGC
GGTGGGAATGGTGGCGGTGGGAATGGTGGCGGCGGGAACGGTGGTGGTGGAAACAGCACC
CAGTGCCCGCTGGATGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTCGGCGGGCTGCTG
AACCTGACTCTGGGGAGCCCGCCGGTGCAGCCGTGCTGCACGCTGATCCAGGGGCTGGCG
GACCTGGAGGCGGCGCTGTGCCTGTGCACGACGCTGAACCTCAACCTTCTGGGCATCAAC
CTCCGCTTGCCCATCGCCCTCAGCCTCGTCCTCAACAACTGCGGCAGGAACGTCCCCTCC
GGCTTCCAGTGCCCCAACTGAGACCGGACACTGCACCTCATGCATGCATGCATGCATGCA
TGCAACGCACGTATGATCGGCTATTTAATTTGAAGTACCACCGCGTACTTAATTGTGTGC
TTTAATTACGTAATCATCTGCTGTTCTGGCTTTATGTGTGACTGGATTTGGATTGCGGGG
AAGCTACGTACTACCACTTCTCCAGGTTCTACGTACGTACATGCACGCACGCACTGTTAC
CTGTGTGCGTAAGGATTTCGTTGTGTGTGTGTGTGTGCTTGATGTGTTATTGTAAACGCC
ACATGTTTGTGATGAGTTCGTTAATGCCAGAATGCTCGTGATGTACCGCTATCTTCGACT
AAATAAAAGATTTGCCATTTTCCATTATTGTTAAAAAAAAAAAAAAAAAGAATCGNTTGG
TGCCGGAAATTGGGTATAGCCATATAGTGTTTGACTGGTTTCACACTCTCTTGAT

Homology of Contig U35_15590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None