barSeed - Barley Seed Development Database

Probe CUST_16180_PI390587928

Source Contig U35_15591

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16180_PI390587928	Hv_44K_v2	GCTTCTCCTACAATTGTAATAAAGTAATTAATATCATGTGTCATCAGCTTTCAGCGGTAC	1043	GeneList: paleturquoise MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	17.330	6.309	0.892	0.479	0.942	0.839
Raw	120.790	68.106	8.932	5.265	2.984	2.915

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33896.1	996	2e-24	851 - 910	100	60 / 60	plus	ABC04433 ABC04435 ABC09075
JLOC1	JLOC1_21896.1	997	8e-25	847 - 906	100	60 / 60	plus
Harvest21	ABC04434	861	3e-25	779 - 838	100	60 / 60	plus
Harvest35	U35_15591	1141	3e-25	1044 - 1103	100	60 / 60	plus

Contig Sequence (1141 bp)

>U35_15591 1141 Hv_44K_v2
CAGAGTGAGCTCTGTCTAAACCCTGTGCACGCACAGCAGCTAGTGAGAGGCAGGTAGCTA
GCTTGGTAGGAAGAAGGAAGCCATGGCGAAGAAGGCGGCGGTGATCGCCACGCTGCTGGC
CCTGAACCTCCTCTTCTTCACCTTCGCCGACGCCTGCGGCTGCCACTGCGGGTCCTGCCC
TAGCCCCGGCGGCGGCGGCGGCGGCGGCGGGGGTGGCGGAGGTGGTGGTGGTGGTGGTGG
AGGGAGTGGTGGCGGCGGAGGAGGGAGTGGTGGCAGTGGAGGAAGCGGCGGAGGCGGTTC
TGGAGGAGGCGGCAGCGGCGGAGGCGGTTCTGGAGGAGGAGGCAGCGGCGGAGGCGGGTC
AGGAGGAGGAGGCAGCGGTGGCGGTGGCGGATCAGGCGGGCTCGCGCGGTGCCCGATCGA
CGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAACGGGCTGATCAACCTGCAGCTGGG
CACGCCGCCGAAGAAGCCGTGCTGCACGCTGATCCAGGGGCTCGCCGACCTGGAGGCGGC
GGTGTGCCTCTGCACGGCGCTCAAGGCCAACATCCTTGGCATCAACCTCAACGTGCCCAT
CGACCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCCGCCGGCTTCCAGTGCCC
CTCCTAGAACACAACAAGACAAGACCCACATCCATCGTCGTCCACTGCAGGCATCCACTA
TACTACGTACGTACGTACGTACGCGCATGCCTGCATGCATGATCTACAATCCATCCATGG
ACTAGTACTGATCTACAGCTAGTCGTATACGTTATTTGCTTCATAATTTACCATCGCTCT
TGCTAGTTTTGCTAAGCTTTACATATGTGTGTTGCGTGTACGTATCTGTGCGTGTGGTAG
TATCGTTTGTACTGCTCCTTGTCATCGAACTAGCTTACGGTATTGTATGAACCATGGAAT
GGATGGAGTTCTCCGCCACATATGATCTCCTGCACGTACCGCTGGCTACTACTAGCTATT
ATATTTGCTTCAAAAAGAGGTTTGCTTCTCCTACAATTGTAATAAAGTAATTAATATCAT
GTGTCATCAGCTTTCAGCGGTACTACAAAAAAAAAAAAATTTTCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_15591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g78250.2	166	2e-52
Arabidopsis v10	None