barSeed - Barley Seed Development Database

Probe CUST_16179_PI390587928

Source Contig U35_15592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16179_PI390587928	Hv_44K_v2	CACGCACAGCAGCTAGTGAGAGGCAGGTATCTAGCTTGGTAGGAAGAAGGAAGCCATGGC	53	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.606	5.259	0.928	0.971	0.896	0.798
Raw	122.611	47.523	9.345	13.335	3.013	2.853

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374366	1107	2e-24	57 - 116	100	60 / 60	plus	ABC04433 ABC04435 ABC09075
MLOC	MLOC_23235.1	530	7e-23	429 - 488	98	59 / 60	plus	None
JLOC1	JLOC1_16067.1	305	4e-23	43 - 102	98	59 / 60	minus
Harvest21	ABC14112	288	1e-23	30 - 89	98	59 / 60	plus
Harvest35	U35_15592	597	3e-25	54 - 113	100	60 / 60	plus
Harvest35	U35_15591	1141	1e-23	28 - 87	98	59 / 60	plus

Contig Sequence (597 bp)

>U35_15592 597 Hv_44K_v2
ACACACACACACACACACGGACGAGGCAGAGTGAGCTCTGTCTAAACCCTGTGCACGCAC
AGCAGCTAGTGAGAGGCAGGTATCTAGCTTGGTAGGAAGAAGGAAGCCATGGCGAAGAAG
GCGGCGGTGATCGCCACGCTGCTGGCCCTGAACCTCCTCTTCTTCACCTTCGCCGACGCC
TGCGGCTGCCACTGCGGGTCCTGCCCTAGCCCCGGCGGCGGCGGCGGCGGCGGCGGGGGT
GGCGGAGGTGGTGGTGGTGGTGGAGGGAGTGGTGGCGGCGGAGGAGGGAGTGGTGGCAGT
GGAGGAAGCGGCGGAGGCGGTTCTGGAGGAGGCGGCAGCGGCGGAGGCGGTTCTGGAGGA
GGAGGCAGCGGCGGAGGCGGGTCAGGAGGAGGAGGCAGCGGTGGCGGTGGCGGATCAGGC
GGGCTCGCGCGGTGCCCGATCGACGCGCTGAAGCTGGGCGTGTGCGCCAACGTGCTCAAC
GGGCTGATCAACCTGCAGCTGGGCACGCCGCCGAAGAAGCCGTGCTGCACGCTGATCCAG
GGGCTCGCCGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCGCTTCAGGCCAACATC

Homology of Contig U35_15592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None