barSeed - Barley Seed Development Database

Probe CUST_16172_PI390587928

Source Contig U35_41861

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16172_PI390587928	Hv_44K_v2	GAGGAGGAGCCGGCTGCGAAGCCCAAGACCCGCCGGACCAAGAAGTCCCCCGAGCAGGAG	324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356512	2123	2e-24	347 - 406	100	60 / 60	plus	ABC17600
MLOC	MLOC_53360.1	956	2e-24	332 - 391	100	60 / 60	minus	None
JLOC1	JLOC1_34279.1	750	8e-25	311 - 370	100	60 / 60	minus
Harvest21	ABC37120	384	3e-25	325 - 384	100	60 / 60	plus
Harvest35	U35_41861	384	3e-25	325 - 384	100	60 / 60	plus

Contig Sequence (384 bp)

>U35_41861 384 Hv_44K_v2
GCTCCCCCCTCCTGCTACCGCTCACCAGCGGCGAATTCCGCGAAGAAGCGAGGGGCAATG
GCCATGGCCGCCGCCTCCCCGTTCCTCCTCGTGCAGCCTTTAGCCCCCAAGCCCCATCGC
CCTTTCGGGCCTCTACACCCCTGCCTCCTCCGGGCCCGCCTCCTCCGCTGCTCGCCCAAC
GGCGCCGCGGCGCCGGAACCCCCTCCAAAGTCCACCCCACGCCGCGGGCGGAAGAAGGCG
TCGGAGCCGGGCTCGTCGCCGCCGAAGGCGAAGGCTACGAGGCGCAAAACCAAAAAGGCG
GGACAGGAGTCCGACTCGGAGGGCGAGGAGGAGCCGGCTGCGAAGCCCAAGACCCGCCGG
ACCAAGAAGTCCCCCGAGCAGGAG

Homology of Contig U35_41861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None